PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4NG062800.3.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 334aa    MW: 37103 Da    PI: 7.9022
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4NG062800.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM63.85.2e-20411443128
                  NAM  43 ePwdLp.kkvkaeekewyfFskrdkkyatgkrknra.......................tksgyWkatgkdkevlskkgelvglkktLvf 108
                           Pw +  + ++++  + +fF++ +k+y+tg+rk+r+                        ++ +W++tgk+++v++  g++ g+kk+Lv+
  Pavir.4NG062800.3.p   4 YPWPIGhAGLTKDGLSRHFFHRPSKAYTTGTRKRRKiqppaadassssapaaqqqqqqqRSETRWHKTGKTRPVVV-AGRQRGCKKILVL 92 
                          67777634444555588******************88****************99998755789************.9999********* PP

                  NAM 109 y..kgrapkgektdWvmheyrl 128
                          y   g+++++ekt+Wvmh+y+l
  Pavir.4NG062800.3.p  93 YtnFGKHRRPEKTNWVMHQYHL 114
                          *5547999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100521.7751133IPR003441NAC domain
SuperFamilySSF1019411.7E-223133IPR003441NAC domain
PfamPF023651.4E-721114IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MSMYPWPIGH AGLTKDGLSR HFFHRPSKAY TTGTRKRRKI QPPAADASSS SAPAAQQQQQ  60
QQRSETRWHK TGKTRPVVVA GRQRGCKKIL VLYTNFGKHR RPEKTNWVMH QYHLGENEEE  120
REGELVVSKI FYQTQPRQCG AAAEPAAPAS SDTVDGAADP AADAVVAPPD VSDGGVFHGA  180
TGIDEFNFAQ FRSSFEEVDV GTSVQVPASR ADEEVHTGHL HLHQEHNLHQ HRYPNQEQQR  240
MAAAAAAFQI STPAEPITTM ISSSPMVHHG SVILQHQEPY DHSASYRHHQ QEDEQPHQSR  300
NFDGRSTSGL EEVIMGCTSR RSRRGVSIVQ NLY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4NG062800.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9697751e-171EU969775.1 Zea mays clone 335447 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812519.11e-180NAC domain-containing protein 75-like
TrEMBLA0A3L6S0J90.0A0A3L6S0J9_PANMI; NAC domain-containing protein 43-like isoform X2
STRINGPavir.Db01277.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.15e-53NAC domain containing protein 75