PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4NG078000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 374aa    MW: 39812.5 Da    PI: 4.8211
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4NG078000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM73.36.2e-23431761128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWk..atg 87 
                          lppGf F P+d ++v++yL +++ g++l+l+  i + d +++ Pw+L +  ++ +++ +fF+  + ++ +g+r++r  +  g+W+   t 
  Pavir.4NG078000.1.p  43 LPPGFLFAPEDGDVVDQYLLRRILGQPLPLDGLILDDDPLSAPPWELLE-RNGCKDDAFFFALGQARSGKGSRQKRtCAGGGFWNgeRTC 131
                          79****************************999**************73.34556799******************77789***933333 PP

                  NAM  88 kdkevlsk......kgelvglkktLvfykgrapkgektdWvmheyrl 128
                           d e l+       + e+ + kk L f +g ++   +t Wvmhey++
  Pavir.4NG078000.1.p 132 VDGEKLRVpgpggaGVEVAWRKKALSFQEGGEKG--STGWVMHEYAI 176
                          344444335777766666999******9887766..8********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510056.345125IPR003441NAC domain
SuperFamilySSF1019416.41E-3036195IPR003441NAC domain
PROSITE profilePS5100527.96943195IPR003441NAC domain
PfamPF023659.4E-1544175IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MHEYAVTAPE DLARSPLRLY HIRRSSYGRK QSGAMEVPRA LGLPPGFLFA PEDGDVVDQY  60
LLRRILGQPL PLDGLILDDD PLSAPPWELL ERNGCKDDAF FFALGQARSG KGSRQKRTCA  120
GGGFWNGERT CVDGEKLRVP GPGGAGVEVA WRKKALSFQE GGEKGSTGWV MHEYAITAPD  180
HLAASQMRLY RIRFSGHGKK RKRGEADSLA DEAAPAAARR RVADDPLLDI STSQPSCSSS  240
TVMVDHAYGN CPTDAGQLAA PVSISANQDL NPGGITVDTS LDLSFLDDFD IDEFMRSLGD  300
LPSTDPCFLS AVTDTGAYLD ADAVGSSFFG PTGSPYNGVG ADQVGMASST LHRGCMEPAD  360
SFIAGLNQSY AAC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-114117613140Stress-induced transcription factor NAC1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1197203GKKRKRG
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4NG078000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813463.10.0uncharacterized protein LOC112890817
TrEMBLA0A2T7E0R60.0A0A2T7E0R6_9POAL; Uncharacterized protein
STRINGPavir.Db01755.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80222137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33480.29e-10NAC domain containing protein 41