PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4NG083700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 195aa    MW: 20678.4 Da    PI: 8.5957
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4NG083700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.000343860123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C++C   F ++  L rH+++H
  Pavir.4NG083700.1.p 38 FTCNYCQCKFFSSQALGRHQNVH 60
                         89*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.23E-53665No hitNo description
Gene3DG3DSA:3.30.160.604.1E-43764IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.1573865IPR007087Zinc finger, C2H2
PROSITE patternPS0002804060IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MREHALKYKA SATTPSNLKD GEADAAGAVA ARDPLRAFTC NYCQCKFFSS QALGRHQNVH  60
QRERTLARRA LRLDAATPYG CYADVVSLPL YGSALYTIGI KAHASAAARP HLEQQQWHDA  120
AAAARADELK PALGLLSPMP FFVGDDEVSF GWPGSFRPIA AAAPVGAWPS TCLAPTPCLP  180
ARSPTSRSGS ELIG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4NG083700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797778.14e-63zinc finger protein 4-like
RefseqXP_025797779.14e-63zinc finger protein 4-like
TrEMBLA0A2T7CF722e-63A0A2T7CF72_9POAL; Uncharacterized protein
STRINGPavir.Db01925.1.p1e-140(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98473041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66140.18e-16zinc finger protein 4