PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4NG092500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 192aa    MW: 20862.9 Da    PI: 9.4003
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4NG092500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.000383759123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C  C+k  s++ ++ +H r+H
  Pavir.4NG092500.1.p 37 FVCLVCTKESSSQQHMAVHCRKH 59
                         89********************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MEDQTWEAYF TDTPPPAPSL TKIITDLRKR VLVSPIFVCL VCTKESSSQQ HMAVHCRKHV  60
QAGMAKGTVK HIKYYPDHTT CYFFGINPQP TPRDPGSANR VRQVPMPSYK TVLSYAGNAF  120
VSHLASMLPE NPNGVSPIVT PIGNMSNIDL TLRLGSTPGT LPLSGSSSSA NNIHSASDDP  180
KGKKVIPWPY N*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4NG092500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813180.11e-116uncharacterized protein LOC112890514
TrEMBLA0A3L6PAI61e-106A0A3L6PAI6_PANMI; Uncharacterized protein
STRINGPavir.Db01013.1.p1e-135(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1212523