PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.4NG100700.2.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Nin-like

Protein Properties

Length: 287aa MW: 32508.1 Da PI: 8.1248

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.4NG100700.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	87.7	9.8e-28	156	206	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 e +++e +s+yF++pi +AA+eL+v+lT+LK++CR++GI+RWPhRk+ksl Pavir.4NG100700.2.p 156 ETALTFELVSQYFYMPIMQAARELNVGLTLLKKRCRELGIPRWPHRKMKSL 206 6789*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	19.156	143	226	IPR003035	RWP-RK domain
Pfam	PF02042	6.5E-22	159	206	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MCPMISGFMG RISLPSSPYN CWPASNSSIS HSPGRMEANH EESCLLPYWT SAWAGSNLLE 60 EEALLSSLSF PSLHFQPSYS TITPSNILQD ELDAIFKDDV LKHWDEMERA DSKAEDGGHK 120 RLPLLCYGDE KDVFSGSNSG ATKVAGADQR ARPPEETALT FELVSQYFYM PIMQAARELN 180 VGLTLLKKRC RELGIPRWPH RKMKSLQSLI NNVQVLQEAG KATGEEQLRA VVEMLQQEKQ 240 LLEQRPYVQL EKKTKRLRRA CFKANYKKRR LLALEGEEAT RTTHKY*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.4NG100700.2.p

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004966836.1	1e-138	protein RKD2
TrEMBL	A0A3L6RY28	1e-146	A0A3L6RY28_PANMI; Protein RKD2
STRING	Pavir.J13146.1.p	0.0	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	5e-38	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Pavir.4NG100700.2.p