PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.4NG102500.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 332aa MW: 37563.7 Da PI: 5.9695

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.4NG102500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70.9	2.9e-22	23	111	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 +f+ +Y+ +GF+vrk++s+ s+ +g++t+ ++vCs+eg+r++ +++ + ++ raetrtgCk ++++++++ g++evt+++leHnH l Pavir.4NG102500.1.p 23 QFWVTYGGYAGFDVRKRYSNVSSFDGKVTSCRYVCSNEGHRRKGQTD-HVTKCFRAETRTGCKSRMTLTLDRgAGNYEVTDVVLEHNHIL 111 69***************************************9999.99999***************9*************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.4E-17	23	111	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MAEFNKGTPQ VGLRFKTPDE AWQFWVTYGG YAGFDVRKRY SNVSSFDGKV TSCRYVCSNE 60 GHRRKGQTDH VTKCFRAETR TGCKSRMTLT LDRGAGNYEV TDVVLEHNHI LDLPETRHLM 120 ASQRKISEMQ AFDIETADDS GIRPKAAHEL ACRQVGGLLN LTYTCRDQKN YLQSKRQREL 180 AFGQAGSMLK YFHEKISENP SFQYALQVDC EERITNIFWA DAKMIIDYAH FGDVVTFDTT 240 FGTNKKYRPF GVFLGLNQFR ETTIFGAGQG NDEGEEGEDR DGAHPHVQAE DDSSNKETNF 300 GMHEYSAIGT FTRLLTSAAC DEGNIYNEDL F*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.4NG102500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021310602.1	1e-176	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A287W7H4	1e-159	A0A287W7H4_HORVV; Uncharacterized protein
STRING	Sb02g029930.1	1e-171	(Sorghum bicolor)
STRING	Sb03g010890.1	1e-167	(Sorghum bicolor)
STRING	Sb09g018290.1	1e-167	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-42	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pavir.4NG102500.1.p