PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4NG119700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family CO-like
Protein Properties Length: 451aa    MW: 48200.6 Da    PI: 4.8181
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4NG119700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.31.3e-072364338
             zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                         +r C+ + + +++++C  ++ +lC+ C ++ H+       H+
  Pavir.4NG119700.1.p 23 ARACDGCLRRRARWYCAADDAFLCKGCDTSVHSAnplarrHE 64
                         578*****************************6567777776 PP
2CCT67.73.1e-23394437144
                  CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                          Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a
  Pavir.4NG119700.1.p 394 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 437
                          9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.5E-112168IPR000315B-box-type zinc finger
PROSITE profilePS5011910.5522168IPR000315B-box-type zinc finger
PfamPF006434.0E-62465IPR000315B-box-type zinc finger
CDDcd000217.31E-82668No hitNo description
PROSITE profilePS5101716.083394436IPR010402CCT domain
PfamPF062037.7E-18394436IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MIATGSSAKK AAAAAGAVGG KAARACDGCL RRRARWYCAA DDAFLCKGCD TSVHSANPLA  60
RRHERLRLRP TSPLRAPPPA GEAKREPRDE VVPAWFKRKA RTPRGGHARS LGQVLSRRLV  120
VPEAAGGDSP DGRNGEEGEV EEEEEQLLYR VPVFDPALAE FCSPPPLEDA AAVASSCNED  180
GAVEDPAKPD PAAPAAPPPA QLFPDGHASF EPTNAELREF AADMEALLGR GLDDGNEEDS  240
SFYMETLGLL DPVDDDAARV KVEIDGSGAA CETSGTLASC GLELEAEASD EMLDIDFDSG  300
SPDQETPPDE KAGSNDTSAD AQFLQTSLSL TLNYEAIIQS WGSSPWTGGC ERQHVKLDDS  360
WPHDYTGVWL VGGMVGHGGE ELCTPRLGTM DGGREARVSR YREKRRTRLF SKKIRYEVRK  420
LNAEKRPRMK GRFVKRATAG GSVVAVAGVA *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1404420RRTRLFSKKIRYEVRKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.37660.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4NG119700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813938.10.0zinc finger protein CONSTANS-LIKE 16-like
TrEMBLA0A3L6S2B20.0A0A3L6S2B2_PANMI; Zinc finger protein CONSTANS-LIKE 16-like
STRINGPavir.J30409.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32833058
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.15e-71B-box type zinc finger protein with CCT domain