PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4NG122300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 226aa    MW: 23274.8 Da    PI: 4.4535
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4NG122300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.82e-161563355
                  AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         ykGVr ++ +g+Wv+e+r p   g+++r++lg++ tae Aa+a++aa ++l+g
  Pavir.4NG122300.1.p 15 YKGVRMRS-WGSWVSEVRAP---GQKTRIWLGSHSTAEAAARAYDAALLCLKG 63
                         9****998.*******9998...557************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.4E-261473IPR001471AP2/ERF domain
SMARTSM003808.3E-281479IPR001471AP2/ERF domain
SuperFamilySSF541712.75E-161474IPR016177DNA-binding domain
PROSITE profilePS5103220.6661473IPR001471AP2/ERF domain
PRINTSPR003672.8E-81526IPR001471AP2/ERF domain
PfamPF008473.8E-101563IPR001471AP2/ERF domain
CDDcd000187.57E-141573No hitNo description
PRINTSPR003672.8E-83753IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MVKTAAAKHG AKRTYKGVRM RSWGSWVSEV RAPGQKTRIW LGSHSTAEAA ARAYDAALLC  60
LKGSAAAADL NFPLRLPFDL PPAAMSPKAI QRVAAAAAAG GGAGFAACAA DNADSACSGT  120
TPAWSGGSPS RSDDASAVSS LESTVSSESE LPAAHHYGDA DADADADYYS SLADIDAFFQ  180
SPKCMEYAMM DPCSAFFAPA PVAADDACWE EEGDLALWSF STLDC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4NG122300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0046878e-83AP004687.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0021C04.
GenBankAP0149628e-83AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCP0126148e-83CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004964908.11e-106ethylene-responsive transcription factor ERF014
TrEMBLA0A3L6S3081e-105A0A3L6S308_PANMI; Uncharacterized protein
TrEMBLK3Y1B31e-105K3Y1B3_SETIT; Uncharacterized protein
STRINGPavir.J26231.1.p1e-159(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31973469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G44830.14e-23ERF family protein