PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4NG159800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 182aa    MW: 19707.9 Da    PI: 9.8269
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4NG159800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_137.16.9e-1288146462
                          XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                           +r rr ++NRe+ArrsR RK+ ++ +L+  ++ L + N++L ++l++    +++++ +
  Pavir.4NG159800.1.p  88 ERRRRRTASNRESARRSRVRKQRQLGQLRAQAAHLRGDNRDLLDRLNRAIRDCDRVRRD 146
                          5899*******************************************998888877765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003387.3E-985149IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.40487150IPR004827Basic-leucine zipper domain
PfamPF001708.7E-987144IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.88E-889137No hitNo description
Gene3DG3DSA:1.20.5.1705.9E-689135No hitNo description
PROSITE patternPS00036092107IPR004827Basic-leucine zipper domain
CDDcd147023.56E-1396141No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MYPGEVASVV LPYLPAAATV AFGFGPHYHP PADDNHFLFH GIGTDLITPP CAAAAHCQQL  60
PQPFLDRAAP GPHSHDEAAG AGERLAEERR RRRTASNRES ARRSRVRKQR QLGQLRAQAA  120
HLRGDNRDLL DRLNRAIRDC DRVRRDNARL GGERAALQRR LQELAAAGDD DGGSGTAATA  180
T*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18893RRRRRT
2101107RRSRVRK
3101108RRSRVRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4NG159800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7282635e-65KJ728263.1 Zea mays clone pUT6540 bZIP transcription factor (bZIP59) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813468.11e-75basic leucine zipper 8-like
TrEMBLA0A3L6PFI73e-75A0A3L6PFI7_PANMI; Light-inducible protein CPRF3
STRINGPavir.Db01631.1.p1e-126(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118635126