PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4NG163500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family M-type_MADS
Protein Properties Length: 184aa    MW: 20188.9 Da    PI: 5.4091
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4NG163500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF58.39.4e-191656343
                         --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
               SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                         ie+  +r+vtfskR+ g+lKK +ELS LC+a va i+fs+ 
  Pavir.4NG163500.1.p 16 IEDADRREVTFSKRKSGLLKKVSELSLLCGAHVAFIVFSPG 56
                         99*************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.8E-26665IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.899666IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.58E-23777IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-17828IPR002100Transcription factor, MADS-box
PfamPF003191.9E-201660IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-172843IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-174364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MGRPSKGRQR IEIRLIEDAD RREVTFSKRK SGLLKKVSEL SLLCGAHVAF IVFSPGDRAF  60
ALGTPSVDHI LYCYDPLPGD EDDGDLLSLL QDGEDVSATA DRVAVEAIVQ RTEETKARVA  120
AEKARMDAVG EKVRQAKVKA GGKFWWEADV EALGDAELPE FTRALGRLRD NVQRHLDQLL  180
SSA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.323560.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4NG163500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025811768.11e-111agamous-like MADS-box protein AGL62
TrEMBLA0A2S3HIR91e-110A0A2S3HIR9_9POAL; Uncharacterized protein
TrEMBLA0A2T7DXP11e-110A0A2T7DXP1_9POAL; Uncharacterized protein
STRINGPavir.J16245.1.p1e-129(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28333088
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.17e-25AGAMOUS-like 62