PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4NG179800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 454aa    MW: 48432.8 Da    PI: 9.4322
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4NG179800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_140.84.8e-13148190544
                          CHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHHHH CS
               bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLee...kvkeLeaeNka 44 
                          k  rr+++NReAAr+sR+RKka+i++Le    + + Le+e+++
  Pavir.4NG179800.1.p 148 KTLRRLAQNREAARKSRLRKKAYIQQLESgriRLAHLEQEMQM 190
                          7789***********************9544489999999864 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.3E-9143189No hitNo description
SMARTSM003388.3E-5144197IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.577146176IPR004827Basic-leucine zipper domain
PfamPF001702.4E-10148191IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.06E-7148181No hitNo description
PROSITE patternPS000360151166IPR004827Basic-leucine zipper domain
PfamPF141443.3E-25227298IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MAYPSTSGMV QASSSLHGII RRDPEGYDMP SDLDQALLLY FDGQQQAANR PSIQEQQPQT  60
LNIFPSQPMH IEPSPKGSMS SSAAAAQVAG PSKTSQAAPS KAGGGPLSAG KSSKAAIKRE  120
GSAGGKHGGA GAGPSSSDQE GPRTPDPKTL RRLAQNREAA RKSRLRKKAY IQQLESGRIR  180
LAHLEQEMQM ARTHQGALWG TGTLSPDAAL FNLEYERWLG DHSKVVARLR AAAEEHRPDG  240
ELRAYADEAA SHYGALMGLK ARAAAADPLH LLSGLWKGAA ERCFLWIGGF RPSELIKVAV  300
RHVEPLAEQQ AAGARDVEQA ARRAEEALDA ELEALLRSLS EVVASDAQPP PPGVFGGQLY  360
PHLPGADAAG YMGMGHMHMA LAMDKLATLG TSLRQADELR MQALQALRQI LTARQAARCF  420
VAVDDYFCRL RALSTLWTTT RAAPPQLARG PAG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.276290.0root
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4NG179800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0550420.0BT055042.1 Zea mays full-length cDNA clone ZM_BFc0123E11 mRNA, complete cds.
GenBankKJ7276040.0KJ727604.1 Zea mays clone pUT5464 bZIP transcription factor (bZIP70) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004965885.10.0transcription factor TGAL8 isoform X1
SwissprotQ69T211e-180TGAL8_ORYSJ; Transcription factor TGAL8
TrEMBLK3XWV90.0K3XWV9_SETIT; Uncharacterized protein
STRINGPavir.Db00756.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129722126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.33e-86bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]