PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.4NG181500.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 104aa MW: 12285.1 Da PI: 8.3806

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.4NG181500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	25.9	3.3e-08	3	43	50	90
FAR1 50 kerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++rr+ ++r+ C+a+ v+k++ ++wev ++e eHnHe++ Pavir.4NG181500.1.p 3 RQRRRDYVDRIRCHACTIVRKTTPSQWEVVHIEREHNHECV 43 6889999*******************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-5	3	43	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 104 aa Download sequence Send to blast
MVRQRRRDYV DRIRCHACTI VRKTTPSQWE VVHIEREHNH ECVKKFSLTK YMNSHREIPA 60 EEKEFIKFLH GCCITTTHTY QIMAELYGGI EKCPYTEGDA KNL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.4NG181500.1.p

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A1E5W4D6	3e-55	A0A1E5W4D6_9POAL; Uncharacterized protein
STRING	Pavir.Db00850.1.p	9e-72	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7287	5	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-07	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pavir.4NG181500.1.p