PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4NG204500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family M-type_MADS
Protein Properties Length: 217aa    MW: 23330.8 Da    PI: 10.2586
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4NG204500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF67.21.6e-212063346
                         --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
               SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46
                         ienk +rqvtfskR++g+lKKA+ELS LC+a  av ifs+++kl
  Pavir.4NG204500.1.p 20 IENKERRQVTFSKRKAGLLKKASELSRLCGAHFAVTIFSEKQKL 63
                         9*****************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.9E-221069IPR002100Transcription factor, MADS-box
PROSITE profilePS5006621.8241063IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.14E-191168IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-151232IPR002100Transcription factor, MADS-box
PfamPF003191.1E-202063IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-153247IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-154768IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MVKQEGKKTK GKQVIEIRYI ENKERRQVTF SKRKAGLLKK ASELSRLCGA HFAVTIFSEK  60
QKLPQQGGNE AGKAGSGGNV FAMGTPSVDH VVRCFVPLPG DAGYLPAMDD VAGGAAERAA  120
VEAMVQQTEE TKARVAAEVA RMSAIGAKVL TAAPAGSERF WWEADVEALG EAELPEFARA  180
LQRLRDHVRR HADKLQACNP LPRRPAQTGQ GSLKLA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4NG204500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813513.11e-109agamous-like MADS-box protein AGL62
TrEMBLA0A2S3HJB71e-106A0A2S3HJB7_9POAL; Uncharacterized protein
TrEMBLA0A3L6RYQ71e-108A0A3L6RYQ7_PANMI; Agamous-like MADS-box protein AGL62 isoform X3
STRINGPavir.J38547.1.p1e-150(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28333088
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.15e-18AGAMOUS-like 62