PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4NG226200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 334aa    MW: 34740.5 Da    PI: 7.6753
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4NG226200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY87.21.5e-2791150259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES.--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYeg.eHnhe 59 
                           D ++WrKYGqK++kgs++pr+YYrC++  +C+++k+ver+  dp ++++tY+g +H h 
  Pavir.4NG226200.1.p  91 ADLWAWRKYGQKPIKGSPYPRGYYRCSTDkDCKARKQVERCPADPATLIVTYTGgDHSHA 150
                          599***********************9998**********************96379995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.1E-2887152IPR003657WRKY domain
SuperFamilySSF1182907.72E-2389152IPR003657WRKY domain
SMARTSM007748.4E-3290151IPR003657WRKY domain
PROSITE profilePS5081127.24492152IPR003657WRKY domain
PfamPF031062.8E-2292149IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MEGDLGWCCS SEGNNWDLHA VVRSACSGGG RGGLAPPSAS NDSSWLLQMP ASKPRTSGRA  60
GGAERSRSKR KSKKSQVSKE VTRVPVGGPP ADLWAWRKYG QKPIKGSPYP RGYYRCSTDK  120
DCKARKQVER CPADPATLIV TYTGGDHSHA VPLHRNSLAG TTRNKAQAQA QPPSPFPADE  180
APKSEAAPSA SGTDTKSQGS PSVSAGRSPS TPRRSASLGV QYKNEEDDDA APSSRLLLIE  240
GTEMEAEEDD VLVYLMPEEE TAPAGTGNGS GCEDVMLLPK PDEHPPTTCT SSRTNGGGGE  300
AAQVMNIGGN VLYLGPLGMG GCVGAATSSR GLT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-1479152679Disease resistance protein RRS1
5w3x_D2e-1479152679Disease resistance protein RRS1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16469RSRSKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4NG226200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812935.11e-132WRKY transcription factor 22-like
TrEMBLA0A3L6PD891e-131A0A3L6PD89_PANMI; WRKY transcription factor 22-like
STRINGPavir.Db00995.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125622536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.18e-35WRKY family protein