PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4NG233000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 209aa    MW: 22515.9 Da    PI: 8.9248
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4NG233000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.96.5e-1222981387
                         TT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                   B3 13 sgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr 87
                         ++ l++p +fa++  g++ +    + l ++ g++W+ +l+  +++g+   l++GW +F+ a+g+++g +vvF+l++r
  Pavir.4NG233000.1.p 22 LHELRVPGEFAARLgGEDGAAAAVVLLVSPLGKVWREELRRAGGGGGpWQLGGGWAGFAAAHGIEAGWSVVFRLERR 98
                         46799******999633334555677778**********65444444899***********************9875 PP
2B341.82e-13118199488
                          E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                   B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                            t++d +++  + + k+ +++ g+  ++++t+++   + rsW v +++ ++  +y+ ++GWk+F+ + +LkegD ++F++++++
  Pavir.4NG233000.1.p 118 RITRHDITSL--FAVKKSICSSVGLLGTCEITMKMSMGNTRSWPVLFKMANNF-GYITGQGWKRFCCESKLKEGDHCTFSVIETT 199
                          4444444444..6888999999999989999999999999*******655554.59999*********************77643 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.00212107IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.7E-1222103IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-122299IPR015300DNA-binding pseudobarrel domain
PfamPF023621.2E-92398IPR003340B3 DNA binding domain
PROSITE profilePS508639.93925109IPR003340B3 DNA binding domain
SuperFamilySSF1019362.55E-16109206IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.2E-17109206IPR015300DNA-binding pseudobarrel domain
CDDcd100178.37E-9114193No hitNo description
PfamPF023621.1E-10115198IPR003340B3 DNA binding domain
SMARTSM010195.2E-5115208IPR003340B3 DNA binding domain
PROSITE profilePS5086310.405145208IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MAPVVHRARP KYAAALPSPA CLHELRVPGE FAARLGGEDG AAAAVVLLVS PLGKVWREEL  60
RRAGGGGGPW QLGGGWAGFA AAHGIEAGWS VVFRLERRGP VSVEDVECHD NNTSFTKRIT  120
RHDITSLFAV KKSICSSVGL LGTCEITMKM SMGNTRSWPV LFKMANNFGY ITGQGWKRFC  180
CESKLKEGDH CTFSVIETTV WHVTVVSS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4NG233000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ67VL74e-25Y6325_ORYSJ; Putative B3 domain-containing protein Os06g0632500
STRINGSi008427m3e-39(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187