PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.4NG251100.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

C2H2

Protein Properties

Length: 336aa MW: 36610.8 Da PI: 8.6477

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.4NG251100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14	0.00015	100	115	1	16
EEETTTTEEESSHHHH CS zf-C2H2 1 ykCpdCgksFsrksnL 16 +kC++C+ksF++k+n+ Pavir.4NG251100.1.p 100 FKCSKCNKSFTSKDNF 115 89***********997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF53335	2.84E-34	144	329	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase
Gene3D	G3DSA:3.40.50.150	4.1E-35	146	327	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase
CDD	cd02440	2.93E-13	165	271	No hit	No description
Pfam	PF08241	7.6E-22	166	266	IPR013216	Methyltransferase type 11

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008152	Biological Process	metabolic process
GO:0008168	Molecular Function	methyltransferase activity

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
MELLVRAAAA AAASSSPHPS LQLPRRACVA GSCRPRPRRP GFPSLRAAAA AAATAVEPET 60 KEQQNNTSET EVFACPVCYE PLIRKGPPGI NLSAIYRSGF KCSKCNKSFT SKDNFLDLTV 120 TSGTKEYTEQ KPARTELFRS PLVSFLYEWF QMAQDYFQPV AGGILLDVSC GSGLFTRKFA 180 KSGTYSAVIA LDFSENMLRQ CYEFIKQDDT LLNANLALVR ADISRLPFAS CSVDAIHAGA 240 AIHCWPSPSN AVAEISRVLK PGGVFVGTTF LSSPRNNPFS VEALRPLRQI VGPVNTSYNY 300 FTEGELEDLC KSCGFVNYSS KVQRSFIMFS GQKPY*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.29071	0.0	callus\| leaf

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.4NG251100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT035733	0.0	BT035733.1 Zea mays full-length cDNA clone ZM_BFb0080J10 mRNA, complete cds.
GenBank	BT040536	0.0	BT040536.1 Zea mays full-length cDNA clone ZM_BFc0099H23 mRNA, complete cds.
GenBank	BT043068	0.0	BT043068.1 Zea mays full-length cDNA clone ZM_BFc0089L19 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025812995.1	0.0	uncharacterized methyltransferase At2g41040, chloroplastic-like
Swissprot	Q0WPT7	1e-124	Y2104_ARATH; Uncharacterized methyltransferase At2g41040, chloroplastic
TrEMBL	A0A3L6PE98	0.0	A0A3L6PE98_PANMI; Uncharacterized protein
STRING	Sb10g025400.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1920	3	5

Link Out ? help Back to Top
Phytozome	Pavir.4NG251100.1.p

Publications ? help Back to Top
Vidi PA, et al. Tocopherol cyclase (VTE1) localization and vitamin E accumulation in chloroplast plastoglobule lipoprotein particles. J. Biol. Chem., 2006. 281(16): p. 11225-34 [PMID:16414959] Ytterberg AJ,Peltier JB,van Wijk KJ Protein profiling of plastoglobules in chloroplasts and chromoplasts. A surprising site for differential accumulation of metabolic enzymes. Plant Physiol., 2006. 140(3): p. 984-97 [PMID:16461379] Lundquist PK, et al. The functional network of the Arabidopsis plastoglobule proteome based on quantitative proteomics and genome-wide coexpression analysis. Plant Physiol., 2012. 158(3): p. 1172-92 [PMID:22274653]