PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4NG252600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family AP2
Protein Properties Length: 477aa    MW: 51829.1 Da    PI: 8.6109
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4NG252600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2323.2e-10110140136
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkf 36 
                          s+y+GV++++++grW+++I+d      + k+++lg f
  Pavir.4NG252600.1.p 110 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGEF 140
                          78*******************......55******98 PP
2AP241.63.1e-13241291155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s+++GV+++k  g+W+A+I         +k+++lg ++t+ eAa+a+++a+ k +g
  Pavir.4NG252600.1.p 241 SRFRGVTQHK-CGKWEARIGQlM----GKKYVYLGLYDTEMEAAQAYDKAAIKCYG 291
                          789*******.7******77733....25**********77**********99766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003807.0E-23111212IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-14111133IPR001471AP2/ERF domain
PROSITE profilePS5103215.554111206IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-7170207IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.2E-14170206IPR001471AP2/ERF domain
CDDcd000181.84E-24241301No hitNo description
SuperFamilySSF541713.73E-17241299IPR016177DNA-binding domain
PfamPF008475.6E-9241291IPR001471AP2/ERF domain
SMARTSM003801.1E-34242305IPR001471AP2/ERF domain
PROSITE profilePS5103215.843242299IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-17242299IPR001471AP2/ERF domain
PRINTSPR003674.5E-6243254IPR001471AP2/ERF domain
PRINTSPR003674.5E-6281301IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MAATKRSFHG AVDGIARAVA EHQLQADRQE EGAASRMIFG FPVPGVPTTT RAAAAVTQQF  60
FPATVAAAAP APVPPQATEQ CHVAAAASAA DQWARSASRK SRRGPRSRSS QYRGVTFYRR  120
TGRWESHIWD CGKQVYLGEF LSMRTLKLSR MICWHLIRCQ IVFTDAFFFT SSSLFLGGFD  180
TAHAAARAYD QAAIKFRGVN ADINFTLSDY KDEIKKMKNF SKEEFVQVLR RQGAGFVRGS  240
SRFRGVTQHK CGKWEARIGQ LMGKKYVYLG LYDTEMEAAQ AYDKAAIKCY GKEAVTNFEP  300
QTYDEELQVQ SWDGELDLEL SLGCAGSDLS TVAVEACSSA PSRQRTMTLT LDLPEDDEET  360
GAGYPHGSIR TMPSPSPGTF RLLPLADDHA HHPGAGGRDD TAHMLQMGQV GSSGGAAAAH  420
MRWPNGGNNW APPYATARAD DDDGDAAAAA SSGFPPGQLG RRCRRQQPLA ASRPSR*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:A0A0N7KMH0, ECO:0000250|UniProtKB:P47927}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4NG252600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0403461e-166BT040346.1 Zea mays full-length cDNA clone ZM_BFc0084O08 mRNA, complete cds.
GenBankKJ7269411e-166KJ726941.1 Zea mays clone pUT3487 AP2-EREBP transcription factor (EREB55) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810716.10.0AP2-like ethylene-responsive transcription factor TOE3 isoform X1
SwissprotB8B0I81e-143AP24_ORYSI; APETALA2-like protein 4
TrEMBLA0A3L6RYR20.0A0A3L6RYR2_PANMI; Uncharacterized protein
STRINGPavir.J27340.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118213439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.22e-74AP2 family protein