PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4NG255300.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family TALE
Protein Properties Length: 307aa    MW: 33351.5 Da    PI: 6.3535
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4NG255300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.21.1e-072552882154
                          HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          k +yp++e++++L +++gL+ +q+ +WF N+R +
  Pavir.4NG255300.2.p 255 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 288
                          569*****************************87 PP
2ELK30.86.7e-11209230122
                  ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                          ELKh+L+++Y+++L+++++E++
  Pavir.4NG255300.2.p 209 ELKHELKQGYREKLVDIREEIM 230
                          9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.6E-194387IPR005540KNOX1
PfamPF037901.5E-164683IPR005540KNOX1
SMARTSM012561.5E-2598153IPR005541KNOX2
PfamPF037919.7E-17106152IPR005541KNOX2
PfamPF037899.6E-7209230IPR005539ELK domain
SMARTSM011883.8E-4209230IPR005539ELK domain
PROSITE profilePS5121310.196209229IPR005539ELK domain
PROSITE profilePS5007111.758229292IPR001356Homeobox domain
SMARTSM003893.3E-10231296IPR001356Homeobox domain
SuperFamilySSF466896.84E-16231295IPR009057Homeodomain-like
CDDcd000864.64E-11232293No hitNo description
Gene3DG3DSA:1.10.10.602.3E-24236293IPR009057Homeodomain-like
PfamPF059203.2E-18249288IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MAFHYPDHAL AMDPAAAAGV GVGAAVNPSF VSPGGGGGGG GWEREKAAIA AHPLYERLLE  60
AHVACLRVAT PVDQLPRIDA QIAARPPPMA AAAAAAAAGG AQSGGEELDL FMTHYVLLLC  120
SFKEQLQQHV RVHAMEAVMA CWELEQTLQS LTGASPGEGT GATMSDDEDN QVDSESNMFD  180
GNEGSDGMGF GPLMLTEGER SLVERVRQEL KHELKQGYRE KLVDIREEIM RKRRAGKLPG  240
DTASTLKAWW QAHSKWPYPT EEDKARLVQE TGLQLKQINN WFINQRKRNW HSNPASSSSD  300
KSKRKR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1285305RKRNWHSNPASSSSDKSKRKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.22480.0callus| leaf| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Isoform 1 is expressed in roots, leaf blades, leaf sheaths and flowers. Isoform 2 is expressed in leaf blades, leaf sheaths and flowers. {ECO:0000269|PubMed:12034492}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4NG255300.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0998780.0FP099878.1 Phyllostachys edulis cDNA clone: bphylf032a14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008659776.10.0homeobox protein knotted-1-like 11 isoform X2
RefseqXP_020399711.10.0homeobox protein knotted-1-like 11 isoform X3
SwissprotQ0E3C31e-175KNOS2_ORYSJ; Homeobox protein knotted-1-like 2
TrEMBLA0A3L6S1Q70.0A0A3L6S1Q7_PANMI; Homeobox protein knotted-1-like 11 isoform X2
STRINGPavir.Db00648.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.21e-143KNOTTED1-like homeobox gene 3