PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.4NG271600.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bZIP

Protein Properties

Length: 281aa MW: 29919.3 Da PI: 6.0962

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.4NG271600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	55.2	1.6e-17	116	169	3	56
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 e kr rr+ +NRe+ArrsR+RK+a++ eLe v++L++eN +L k+l+e +++ Pavir.4NG271600.1.p 116 ETKRIRRMVSNRESARRSRRRKQAQLSELESQVEQLKGENATLFKQLSEANQQF 169 679*****************************************9888877765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	5.5E-18	114	178	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.679	116	168	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	4.4E-15	116	168	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	8.5E-14	118	169	No hit	No description
SuperFamily	SSF57959	1.0E-12	118	170	No hit	No description
CDD	cd14702	1.20E-6	119	169	No hit	No description
PROSITE pattern	PS00036	0	121	136	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MKKCPSELQL EAFIRESGAG AAESKPGSGP SEPGGSGVFS PGGVGFGDSN TMDGSSWWYG 60 SIRPANPVAS QTASVSASPR ATTPANHTLE SESDSDSESL YEVEGGSCER GTKSMETKRI 120 RRMVSNRESA RRSRRRKQAQ LSELESQVEQ LKGENATLFK QLSEANQQFT TAVTDNRILK 180 SDVEALRVKV KMAEDMVARS AMSCGLGDLG LAPYLNSRKL GQALNMLTVT GLDLLGSEAF 240 RGPTAARQVQ NSPVQSTASL ESLDNRKSSE VTSCAADMWP *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	130	137	RRSRRRKQ
2	132	137	SRRRKQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.14580	0.0	callus\| leaf\| root\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed in developing seeds at low levels from 5 to 20 days after flowering (DAF). {ECO:0000269\|PubMed:11133985}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). May function as a negative regulator in cold and drought stress responses (PubMed:22189955). {ECO:0000269\|PubMed:11133985, ECO:0000269\|PubMed:22189955}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.4NG271600.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by cold stress in roots. {ECO:0000269\|PubMed:22189955}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004965642.1	1e-174	bZIP transcription factor RISBZ5
Swissprot	Q654B3	1e-102	RSBZ5_ORYSJ; bZIP transcription factor RISBZ5
TrEMBL	K3XYN5	1e-173	K3XYN5_SETIT; Uncharacterized protein
STRING	Pavir.Db00496.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2095	37	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G24800.1	6e-30	basic leucine zipper 9

Link Out ? help Back to Top
Phytozome	Pavir.4NG271600.1.p

Publications ? help Back to Top
Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif. J. Biol. Chem., 2001. 276(17): p. 14139-52 [PMID:11133985] Liu C,Wu Y,Wang X bZIP transcription factor OsbZIP52/RISBZ5: a potential negative regulator of cold and drought stress response in rice. Planta, 2012. 235(6): p. 1157-69 [PMID:22189955]