PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4NG281200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 200aa    MW: 20730.8 Da    PI: 8.0506
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4NG281200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.1e-181867255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         +y+GVr+++ +gr++AeIrdp    k++ ++lg+f++ae Aa+a++aa+++l+g
  Pavir.4NG281200.1.p 18 RYRGVRRRP-SGRYAAEIRDPA---KKTPIWLGTFDSAEAAARAYDAAARSLRG 67
                         59*******.7*********83...36*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.1681875IPR001471AP2/ERF domain
PfamPF008476.4E-121867IPR001471AP2/ERF domain
CDDcd000181.42E-151874No hitNo description
SuperFamilySSF541712.62E-211875IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.7E-291876IPR001471AP2/ERF domain
SMARTSM003803.1E-331881IPR001471AP2/ERF domain
PRINTSPR003678.3E-81930IPR001471AP2/ERF domain
PRINTSPR003678.3E-84157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MRRAKPPQPQ PSPSPEIRYR GVRRRPSGRY AAEIRDPAKK TPIWLGTFDS AEAAARAYDA  60
AARSLRGPTA RTNFPSAAAP APRRSRPPAA SAAAQAAAAA AAAAATSSHS SSIESWSDGA  120
TRAAAAALVR SAAPTEEEDE EDCRSYCGSS SSVLCEDTGG DDAAASRAPL PFDLNLPPPH  180
DAAADTDQMG ARYDTLLRL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1918761473Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4NG281200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810343.11e-84ethylene-responsive transcription factor 3-like
TrEMBLA0A3L6RXB51e-81A0A3L6RXB5_PANMI; Uncharacterized protein
STRINGPavir.Db00303.1.p1e-134(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61022347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20310.11e-09ethylene response factor 7