PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4NG328100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 195aa    MW: 21056.1 Da    PI: 10.0209
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4NG328100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_154.72.2e-17122178359
                          XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 
                          +++r +r+++NRe+A rsR+RK+a++e+Le++v  L  eN +Lkk+ +elk eva+l
  Pavir.4NG328100.1.p 122 DDRRSIRMMRNRESALRSRARKRAYVENLEKEVRRLVDENLKLKKQCKELKLEVAAL 178
                          5799************************************************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.9E-14120184IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.8E-16121178No hitNo description
PROSITE profilePS5021711.53122178IPR004827Basic-leucine zipper domain
PfamPF001701.7E-14123178IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.75E-12124178No hitNo description
CDDcd147075.85E-19124178No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MYTYMVSCLS GSAKAVVGFS LKMAGQSAKP LSSSAAANSS WVQKLQAAPG RMAAAWREPD  60
SPQLSFMSGC SSLFSISTLQ DDDDGAFVIA GHALPSTPVS LAGFAGDEVD MEVQQISGGS  120
GDDRRSIRMM RNRESALRSR ARKRAYVENL EKEVRRLVDE NLKLKKQCKE LKLEVAALVL  180
PTKSSLRRTS STQF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.196260.0stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4NG328100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0338581e-121BT033858.1 Zea mays full-length cDNA clone ZM_BFc0165B20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812603.11e-97bZIP transcription factor 46-like
TrEMBLA0A2S3HG733e-96A0A2S3HG73_9POAL; Uncharacterized protein
TrEMBLA0A2T7DU083e-96A0A2T7DU08_9POAL; Uncharacterized protein
TrEMBLA0A3L6PES23e-96A0A3L6PES2_PANMI; Protein FD-like
STRINGPavir.J04759.1.p1e-132(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40173072
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35900.16e-10bZIP family protein