PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4NG337100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 188aa    MW: 19994.3 Da    PI: 8.6044
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4NG337100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.0007680102123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          y+Cp+C++ F      + H+r+H
  Pavir.4NG337100.1.p  80 YPCPICHRLFDAVKAVHGHQRSH 102
                          99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.73E-679150No hitNo description
PfamPF139120.03180104IPR007087Zinc finger, C2H2
SMARTSM003550.5480102IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.97480102IPR007087Zinc finger, C2H2
PROSITE patternPS00028082102IPR007087Zinc finger, C2H2
PfamPF139125.3E-8128152IPR007087Zinc finger, C2H2
SMARTSM003551.8128150IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.198128155IPR007087Zinc finger, C2H2
PROSITE patternPS000280130150IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MNGAQAVFFY GVAYGQFLSG VGGCSSGGGA GGGGSGDEPN RPWRPKSGHE ADAVPAALRN  60
NKKRPASSHK GKDPAGEGRY PCPICHRLFD AVKAVHGHQR SHPERDWRGM APPRPPPPVA  120
ADGRQYRYAC DRCGAPFETR QALGGHRASH SGKMGCFWLS RQQPAAAPPM LPFDLNEPAV  180
PEQEDEE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4NG337100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004967303.11e-70zinc finger protein ZAT3
TrEMBLA0A2S3HG475e-82A0A2S3HG47_9POAL; Uncharacterized protein
TrEMBLA0A2T7DTV45e-82A0A2T7DTV4_9POAL; Uncharacterized protein
STRINGPavir.J33608.1.p1e-133(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130102729
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17180.12e-11C2H2-like zinc finger protein