PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4NG339100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 822aa    MW: 95732.7 Da    PI: 8.8562
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4NG339100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR166.19.2e-21131235291
                 FAR1   2 fYneYAkevGFsvrkskskks...krngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkvkkekdgk 75 
                          f+++Y+  +GF+v+++++ ++   kr+gei k +++C ++gk++++++k             +  +r+t+++ +t+C   ++vk+  +g 
  Pavir.4NG339100.1.p 131 FFSFYGFIAGFEVVTTHTARTthkKRKGEIFKVEMKCHRYGKESKQERKeeiepeiiaavaqKGPKRKTNVQVKTNCPVVMVVKEI-NGI 219
                          9**************99988777799******************999999**********999999********************.*** PP

                 FAR1  76 wevtkleleHnHelap 91 
                          w++++l+l+HnHel+p
  Pavir.4NG339100.1.p 220 WRIIRLDLDHNHELNP 235
                          *************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.0E-19131235IPR004330FAR1 DNA binding domain
PfamPF105516.3E-8355388IPR018289MULE transposase domain
PROSITE profilePS509669.891607645IPR007527Zinc finger, SWIM-type
SMARTSM005754.8E-7620647IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 822 aa     Download sequence    Send to blast
MYSLASENGD ILKNIADKEA MSEDETTDSE TATYSNNWRE DIFNQMRVDN VEIDTGSGCT  60
GINTGGAKSN TETENDADTT RGSQELIEEE IEDFIRSEQK EAAEGNNADT ESKYTPQIGM  120
EFKDRNAAHH FFSFYGFIAG FEVVTTHTAR TTHKKRKGEI FKVEMKCHRY GKESKQERKE  180
EIEPEIIAAV AQKGPKRKTN VQVKTNCPVV MVVKEINGIW RIIRLDLDHN HELNPSNRNQ  240
LFSGRKNMTD MEKAMIRTLN DNNIPTRKMI SILSYLRGGL LALPYKNKDV ANYRTKINRE  300
VTGNDMSKAL EYFRNRKAED PTFFYKFDVD DDMKVKNLFW REGSSLKYYA EYGDCVSFDT  360
TYMTNKYNLP FAPFCGVTGH GHTCMFGYQD KAMRAAIKEV MPNTRHRNCF FHIKYKCYNK  420
NGRCFAAKEG LQEEFEDIIN YSLTTHEFEH LWQKMIADKE LQNNKYFTKM WENRERFIPV  480
YFKDDFFPFI QSTGRSEGTN ARVKENVSQT CSIISFLREF QRIVDGINIK EDIADNQSRE  540
KRPKELMYGY NVEKQAMDLY NKNIFRKFQY ELQQTERLKY EETEKGKCFE VWPKSNQIYK  600
PYRLRKYIVL TELTKGREEF SCICGKFNKD GILCSHILKV IVEEEINGIP EKYIINRWRK  660
KDKKMNLPLP EIVPKTHEML RYNILSRKAA LINSKASKTD EAMQYLSEEF ERIDKTLDEL  720
LSTPLQQAQT HQSRMQDNGS MAEASSANLH ELGHLEDPEK VKQKGRPSLP TRMKPMIEEI  780
RRKMAKEQKK KQPKKQKATG PSARATKKMK KGDEDVTGQT K*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4NG339100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021311831.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLK3ZZ470.0K3ZZ47_SETIT; Uncharacterized protein
STRINGPavir.Aa03355.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-64FAR1-related sequence 5