PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG004200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 207aa    MW: 22080.8 Da    PI: 7.2213
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG004200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM49.11.9e-1512104190
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratk....sgyWka 85 
                          lpp ++F+Ptd ++v +yL +++ g++++ ++++ ++d +++ Pw+L  ++ +a++++ +fF ++ k+   ++r++r++      g+W+ 
  Pavir.5KG004200.1.p  12 LPPACKFDPTDADIVAYYLLPRAVGHSNPHAHAVIDADPCSCPPWELMrRHGHAGSDHAFFFGPTTKHG--SHRASRTVPagegGGTWHG 99 
                          799********************999999989999************8334445666889999988765..4677776433344899**8 PP

                  NAM  86 tgkdk 90 
                          + +d+
  Pavir.5KG004200.1.p 100 QTSDE 104
                          87765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.15E-199104IPR003441NAC domain
PROSITE profilePS5100514.53712162IPR003441NAC domain
PfamPF023656.6E-913104IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MEASRFGFDP SLPPACKFDP TDADIVAYYL LPRAVGHSNP HAHAVIDADP CSCPPWELMR  60
RHGHAGSDHA FFFGPTTKHG SHRASRTVPA GEGGGTWHGQ TSDETGLVLY MITDPLLPVP  120
GAVISRVRMD AKAKKKLQQP APAADNNGGF MGEAAGCKSA LVNTGEGGCL CSPQCWRDGC  180
YVNSSKVSFN EDTNYDRGQN RRLLPS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG004200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004980219.16e-47NAC domain-containing protein 18
RefseqXP_012703557.17e-46NAC domain-containing protein 101
TrEMBLA0A3L6QZ891e-102A0A3L6QZ89_PANMI; NAC domain-containing protein 18-like
STRINGPavir.J22451.1.p3e-75(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143011926
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54330.13e-09NAC domain containing protein 20