PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.5KG004600.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Protein Properties

Length: 461aa MW: 51016.3 Da PI: 6.5158

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.5KG004600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	50.1	5.2e-16	138	226	1	97
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+k +++s+v + +l lp f+++h k +++ ++lede+g+ + + + +++ l++GW++F+ ++++k+gD+v+F+l+g+++f Pavir.5KG004600.1.p 138 FVKRMLQSHVVRGFWLGLPTYFCNKHLPK--KDTGIVLEDENGQDHQTLY--LGAKQG--LSAGWRGFAIEHDIKVGDVVIFQLVGSTKF 221 89**********************544..4456***********..788877..9**********************98888 PP ..EEEEE CS B3 91 elvvkvf 97 +v ++ Pavir.5KG004600.1.p 222 --KVFII 226 ..55555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	3.7E-20	132	229	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	9.42E-23	133	229	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	6.20E-24	136	227	No hit	No description
PROSITE profile	PS50863	12.308	138	229	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.3E-14	138	227	IPR003340	B3 DNA binding domain
SMART	SM01019	3.7E-15	138	230	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 461 aa Download sequence Send to blast
MAMDPPLKRK RGRPPGSQSA KSKMEQKMAL VKQRVALLDS ASSSSSSSSS SAKIDKDVDF 60 VPMDEELAIV AAHQPIEIDY GDSYNEDEDI PLKKVLASKG LENEQKRLPG QNLSASYGST 120 MDRAAEVQAK LPAEHPSFVK RMLQSHVVRG FWLGLPTYFC NKHLPKKDTG IVLEDENGQD 180 HQTLYLGAKQ GLSAGWRGFA IEHDIKVGDV VIFQLVGSTK FKVFIIRANE FTTADGAISL 240 LNLEVHKKGK LSRCDDDEKA EKASPVDNKV PQSDDNNAVA SEAIDGLRIS DSDMDFGDVT 300 SFCNFNIVVN SLVIDCKFHD HQRRTYYELC CSQKSFLHKN LLKQLNLTLV VGVIMETISI 360 AEGIRACKAQ ASSHEDLVIW KKTLESFELL GMNDAFLLKR INDLLGLPAG PRDLSECQKY 420 KELKSERTHA GEKVKALELM LLNVKGMLQK MDAEMESSPV *

Sequence ? help Back to Top

Protein Sequence Length: 461 aa Download sequence Send to blast

MAMDPPLKRK RGRPPGSQSA KSKMEQKMAL VKQRVALLDS ASSSSSSSSS SAKIDKDVDF  60
VPMDEELAIV AAHQPIEIDY GDSYNEDEDI PLKKVLASKG LENEQKRLPG QNLSASYGST  120
MDRAAEVQAK LPAEHPSFVK RMLQSHVVRG FWLGLPTYFC NKHLPKKDTG IVLEDENGQD  180
HQTLYLGAKQ GLSAGWRGFA IEHDIKVGDV VIFQLVGSTK FKVFIIRANE FTTADGAISL  240
LNLEVHKKGK LSRCDDDEKA EKASPVDNKV PQSDDNNAVA SEAIDGLRIS DSDMDFGDVT  300
SFCNFNIVVN SLVIDCKFHD HQRRTYYELC CSQKSFLHKN LLKQLNLTLV VGVIMETISI  360
AEGIRACKAQ ASSHEDLVIW KKTLESFELL GMNDAFLLKR INDLLGLPAG PRDLSECQKY  420
KELKSERTHA GEKVKALELM LLNVKGMLQK MDAEMESSPV *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.5KG004600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JF282802	1e-70	JF282802.1 Panicum virgatum clone B01_PVCAG-2 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025818273.1	0.0	B3 domain-containing protein Os01g0234100-like isoform X1
Swissprot	Q0JP99	1e-177	Y1341_ORYSJ; B3 domain-containing protein Os01g0234100
TrEMBL	A0A2S3HZ84	0.0	A0A2S3HZ84_9POAL; Uncharacterized protein
STRING	Pavir.Ea00041.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6080	23	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	7e-39	B3 family protein

Link Out ? help Back to Top
Phytozome	Pavir.5KG004600.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]