PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG004600.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 460aa    MW: 50888.2 Da    PI: 6.3844
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG004600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.15.2e-16137225197
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          f+k +++s+v +  +l lp  f+++h  k  +++ ++lede+g+  +  +   + +++  l++GW++F+ ++++k+gD+v+F+l+g+++f
  Pavir.5KG004600.2.p 137 FVKRMLQSHVVRGFWLGLPTYFCNKHLPK--KDTGIVLEDENGQDHQTLY--LGAKQG--LSAGWRGFAIEHDIKVGDVVIFQLVGSTKF 220
                          89************************544..4456***************..788877..9************************98888 PP

                          ..EEEEE CS
                   B3  91 elvvkvf 97 
                            +v ++
  Pavir.5KG004600.2.p 221 --KVFII 225
                          ..55555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.7E-20131228IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.42E-23132228IPR015300DNA-binding pseudobarrel domain
CDDcd100175.64E-24135226No hitNo description
PROSITE profilePS5086312.308137228IPR003340B3 DNA binding domain
PfamPF023622.3E-14137226IPR003340B3 DNA binding domain
SMARTSM010193.7E-15137229IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MAMDPPLKRK RGRPPGSQSA KSKMEQKMAL VKQRVALLDS ASSSSSSSSS SAKIDKDVDF  60
VPMDEELAIV AAHQPIEIDY GDSYNEDEDI PLKVLASKGL ENEQKRLPGQ NLSASYGSTM  120
DRAAEVQAKL PAEHPSFVKR MLQSHVVRGF WLGLPTYFCN KHLPKKDTGI VLEDENGQDH  180
QTLYLGAKQG LSAGWRGFAI EHDIKVGDVV IFQLVGSTKF KVFIIRANEF TTADGAISLL  240
NLEVHKKGKL SRCDDDEKAE KASPVDNKVP QSDDNNAVAS EAIDGLRISD SDMDFGDVTS  300
FCNFNIVVNS LVIDCKFHDH QRRTYYELCC SQKSFLHKNL LKQLNLTLVV GVIMETISIA  360
EGIRACKAQA SSHEDLVIWK KTLESFELLG MNDAFLLKRI NDLLGLPAGP RDLSECQKYK  420
ELKSERTHAG EKVKALELML LNVKGMLQKM DAEMESSPV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG004600.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF2828021e-70JF282802.1 Panicum virgatum clone B01_PVCAG-2 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818273.10.0B3 domain-containing protein Os01g0234100-like isoform X1
SwissprotQ0JP991e-179Y1341_ORYSJ; B3 domain-containing protein Os01g0234100
TrEMBLA0A2S3HZ840.0A0A2S3HZ84_9POAL; Uncharacterized protein
STRINGPavir.Ea00041.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.17e-39B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]