PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.5KG004800.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NAC

Protein Properties

Length: 392aa MW: 42468.1 Da PI: 8.1508

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.5KG004800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	45.3	2.8e-14	9	146	1	126
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvkaeekew....yfFskrdkkyatgkrknr.atks 80 lppG+ F+P+ + + +yLk+ ++g + ++++v++ vd+y+ +P L ++ e +w + ++ +++ r +r +++ Pavir.5KG004800.1.p 9 LPPGVYFRPSPGDCLRFYLKPWIAGVPPSTDRVVQGVDLYSDNPAALLLglppgFSRGFEYKWlvlgHCPCQGGGRSSGRARMKReVATG 98 79**************************999**********6335554333334477665677777777777888999966667 PP NAM 81 gyWkatgkdkevlskkgelvglkktLvfy.......kgrapkgektdWvmhey 126 yWk ++ +v + g +k+L+fy kgr+ g+kt W+m+e Pavir.5KG004800.1.p 99 DYWKVEQSSMAVGA-----DGDRKSLAFYtsssgggKGRRDGGVKTPWLMEEL 146 799999888877.....688*****999888889***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.53E-16	3	155	IPR003441	NAC domain
PROSITE profile	PS51005	19.939	9	174	IPR003441	NAC domain
Pfam	PF02365	9.2E-7	10	146	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 392 aa Download sequence Send to blast
MAAAPFQALP PGVYFRPSPG DCLRFYLKPW IAGVPPSTDR VVQGVDLYSD NPAALLLGLP 60 PGFSRGFEYK WLVLGHCPCQ GGGRSSGRAR MKREVATGDY WKVEQSSMAV GADGDRKSLA 120 FYTSSSGGGK GRRDGGVKTP WLMEELNAPE DEADALGGRR GESTVPVFCQ LYISPRASKD 180 EKLLILGEER VPFDRYGNAK AVRVLLPEDL FDKVFDVVHG QGQAPPPPWS APCVPAQRAE 240 WPPLVADHHH GIAMLPRSVP TGHLAAPPRP LKQRLGGADR EIPSFIVHGD DECSYRAADA 300 SDFREKEPVP TPSPRQEITG TAAAAAWPAS TGTSVHSDGM GCLTATSSLM TSRWTTCQTS 360 RCTTTRWTTS RWTIGKISLT QFFFLIRTDS I*

Sequence ? help Back to Top

Protein Sequence Length: 392 aa Download sequence Send to blast

MAAAPFQALP PGVYFRPSPG DCLRFYLKPW IAGVPPSTDR VVQGVDLYSD NPAALLLGLP  60
PGFSRGFEYK WLVLGHCPCQ GGGRSSGRAR MKREVATGDY WKVEQSSMAV GADGDRKSLA  120
FYTSSSGGGK GRRDGGVKTP WLMEELNAPE DEADALGGRR GESTVPVFCQ LYISPRASKD  180
EKLLILGEER VPFDRYGNAK AVRVLLPEDL FDKVFDVVHG QGQAPPPPWS APCVPAQRAE  240
WPPLVADHHH GIAMLPRSVP TGHLAAPPRP LKQRLGGADR EIPSFIVHGD DECSYRAADA  300
SDFREKEPVP TPSPRQEITG TAAAAAWPAS TGTSVHSDGM GCLTATSSLM TSRWTTCQTS  360
RCTTTRWTTS RWTIGKISLT QFFFLIRTDS I*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.5KG004800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A3L6SXD6	4e-80	A0A3L6SXD6_PANMI; Uncharacterized protein
STRING	Pavir.J24446.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13570	17	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55210.1	1e-08	NAC domain containing protein 63

Link Out ? help Back to Top
Phytozome	Pavir.5KG004800.1.p