PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG023000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 437aa    MW: 47323.8 Da    PI: 6.296
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG023000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM62.91e-19121532128
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLp.kkvka.eekewyfFskrdkkya.........tgk....rk 74 
                          p+GfrF Pt+ el+ + L +++++ +   ++++++++++i +++P++L  + ++  e++ +yfFs+r+ +++         +      r 
  Pavir.5KG023000.1.p  12 PRGFRFVPTELELI-HLLSHRIHRGSlpPPFDRIFHDLRIRDYHPEELYeRYMEDaEHRYIYFFSRREFQKKgaggaapghK-AqkepRL 99 
                          89************.99****9999876677778**************8344444144466999999876665555555441.0445588 PP

                  NAM  75 nratksgyWkatgkdkevlskkgel...vglkktLvfykgrapkgektdWvmheyrl 128
                           ra++ g Wka+g  +++   +++     g   tLvfy  r     k++W mhe+ +
  Pavir.5KG023000.1.p 100 MRAARGGGWKASGGGQNLRWPRSKGgffGGRMMTLVFY-DRG--VDKSKWGMHEFVV 153
                          88899*********9999987443344478889*****.344..459*******975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-236164IPR003441NAC domain
PROSITE profilePS5100523.25111169IPR003441NAC domain
PfamPF023659.0E-1312152IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MADGSLTRHG FPRGFRFVPT ELELIHLLSH RIHRGSLPPP FDRIFHDLRI RDYHPEELYE  60
RYMEDAEHRY IYFFSRREFQ KKGAGGAAPG HKAQKEPRLM RAARGGGWKA SGGGQNLRWP  120
RSKGGFFGGR MMTLVFYDRG VDKSKWGMHE FVVPFKDLAL YRLYVLRSGD MESDNDGAGS  180
SSEMLANAYD DHFSPSTAVA PCPPVQPWGI FDTGASTSHS LMPPPPQQHR PSFEHAHHYH  240
HQFAFGAASA GAATQQQVHE MPVHGAGLLG DMCQLAIPAA PVPVPPAAAD PAAHRAATTT  300
AAHGAGKEAG HFVATRSPCS PPAIGSPLVE QHATATTEPP HAQSADCVKP AEEAAPPPLE  360
DVPPAAEDER MAASADGPDM PDWNFDFAPF DDYSFQFTME EILGYPAMEG DSNSGGDNCS  420
SQAGDTKQGP PSAIKI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG023000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004967494.11e-129NAC domain-containing protein 48
TrEMBLA0A2S3HZ410.0A0A2S3HZ41_9POAL; Uncharacterized protein
STRINGPavir.J17376.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35632367