PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG028400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 273aa    MW: 28439.2 Da    PI: 6.9568
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG028400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.35.5e-1381127354
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          ++h+e+ErrRR+riN  +++Lr+++P        K++Ka+ L +++ ++k+L
  Pavir.5KG028400.1.p  81 KSHSEAERRRRERINAHLATLRTMVPCT-----DKMDKAALLAEVITHVKKL 127
                          58*************************7.....6****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.66E-1371130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.40878127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-1081127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-1482129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.0E-1284133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.27E-491129No hitNo description
CDDcd048730.00112175240No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MDSVPFGDTE LFDGFYGGFS GHGYDEYGLG QLVGASTSHV PLDGGGAEEV DGAAAASTEL  60
LLEAPKRKGD HRSEKAAMAL KSHSEAERRR RERINAHLAT LRTMVPCTDK MDKAALLAEV  120
ITHVKKLKTS AARIRSHCAV PADADDVAVE LVPAPDAAVA SPPPSHGGGL LVKATLSCAE  180
GADVFADVKS ALRPLRLRVV GSEVTTLGGR VLLTFLMSPP PAGDVGGLAE SVRQALQSVL  240
DKASSALEFA PRASLLNKRR RVSTFESSSS SS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18691ERRRRE
2257261KRRRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG028400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0844486e-75BT084448.2 Zea mays full-length cDNA clone ZM_BFb0115J18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818650.11e-136transcription factor bHLH30-like
TrEMBLA0A2S3HYZ91e-135A0A2S3HYZ9_9POAL; Uncharacterized protein
STRINGPavir.Ea00157.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP110112938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25710.12e-22basic helix-loop-helix 32