PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG044100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family DBB
Protein Properties Length: 341aa    MW: 35430.6 Da    PI: 6.2275
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG044100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box17.49.3e-06444539
             zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                          C+ +e  e++  C  ++  lC+ C    H+       H +
  Pavir.5KG044100.1.p  4 LCSACEAAEARVLCCADEAALCARCDRDVHSAnrlagkHHR 44
                         7******99*********************65778888554 PP
2zf-B_box29.41.7e-095696438
             zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                         + C+ ++e ++ +fC +++ llC++C ++ H+       H+
  Pavir.5KG044100.1.p 56 PGCDICQESHAYFFCVEDRALLCRSCDVAVHSAnafvsgHR 96
                         56******99*********************6566666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.637147IPR000315B-box-type zinc finger
SMARTSM003361.3E-8147IPR000315B-box-type zinc finger
CDDcd000216.48E-8347No hitNo description
SMARTSM003368.1E-1753100IPR000315B-box-type zinc finger
PROSITE profilePS501199.75553100IPR000315B-box-type zinc finger
PfamPF006431.8E-85796IPR000315B-box-type zinc finger
CDDcd000211.69E-1058100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MKVLCSACEA AEARVLCCAD EAALCARCDR DVHSANRLAG KHHRLPLQPP AAASAPGCDI  60
CQESHAYFFC VEDRALLCRS CDVAVHSANA FVSGHRRFLL TGVQVGLQPD AQEPPPDPPN  120
AAAAAPAPLP TPPPAKKARS SPAPLYSDDD IDWGAGGPDV GIAGSLPDWS VVDEQFGAPV  180
PTPAEPVVSR TPSKRSPRRT LAAAFTVQGG FAGGMPDWAL DEFFGFSEFN AGLGFTENVP  240
SKADSGKLGS TDGSPTGRSS SGSAQDFFGQ VPEFHQWSVP ELPSPPTASG LHWQGGPRHG  300
ATAADIAAVS VPDISSPKNP FRCFAAGAGQ TQPPPPKRRR *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG044100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819038.10.0B-box zinc finger protein 22-like
TrEMBLA0A2T7DSJ90.0A0A2T7DSJ9_9POAL; Uncharacterized protein
STRINGPavir.Ea00224.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17943382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.13e-42light-regulated zinc finger protein 1