PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG046000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 243aa    MW: 25428 Da    PI: 6.2468
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG046000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.94.4e-174997355
                  AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         y+GVr +  +g+Wv+eIr+p++   + r++lg+f  +e+Aa+a++ a+++++g
  Pavir.5KG046000.1.p 49 YRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPCPEMAARAHDVAALSIKG 97
                         9****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.2E-124797IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-2048106IPR016177DNA-binding domain
PROSITE profilePS5103222.848105IPR001471AP2/ERF domain
SMARTSM003801.2E-3348111IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.0E-3148106IPR001471AP2/ERF domain
PRINTSPR003673.1E-94960IPR001471AP2/ERF domain
CDDcd000185.20E-2949107No hitNo description
PRINTSPR003673.1E-97187IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MSDLSSDTSS TTSSYSSSPS TSSSSRKSSG GGKSSKRPRA DDGGAPPAYR GVRMRAWGKW  60
VSEIREPRKK SRIWLGTFPC PEMAARAHDV AALSIKGARA VLNFPDLAPA FPRPASLAPR  120
DVQAAAARAA LMQHRHQPGG AAAGTDSSSS SSPEPAGGCA AAAAAADDAQ RPAAGSNGHR  180
HDEPEPSPAE RQPAQVEVAE LVFDELAPLW VEDVVEFGPS DHPWTPYDGL DAVGFQPLLW  240
EY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-15491051572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.199311e-51stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG046000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ3538521e-112DQ353852.1 Triticum aestivum AP2 domain transcription factor TaDREB2 mRNA, complete cds.
GenBankGU7850081e-112GU785008.1 Triticum turgidum subsp. durum drought responsive element binding transcription factor 2 (DREB2) gene, promoter region and complete cds.
GenBankHG6703061e-112HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818661.11e-102ethylene-responsive transcription factor ERF035-like
TrEMBLA0A2T8IPB81e-101A0A2T8IPB8_9POAL; Uncharacterized protein
STRINGPavir.Eb00249.1.p1e-100(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.11e-44ERF family protein