PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG052000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 878aa    MW: 97885.7 Da    PI: 9.1083
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG052000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.49.1e-104686345
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                         +W+++E  ++++a +++G++ Wk+I+  +g g++  +++s + 
  Pavir.5KG052000.1.p 46 KWSKDELTQFYEAYRRHGKD-WKKISLAVG-GKSSDMVRSLYS 86
                         8*****************99.*********.*******99665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129311.3544299IPR017884SANT domain
SMARTSM007172.5E-44391IPR001005SANT/Myb domain
SuperFamilySSF466893.21E-94690IPR009057Homeodomain-like
CDDcd001674.67E-64683No hitNo description
PfamPF002491.3E-84685IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.6E-44685IPR009057Homeodomain-like
SMARTSM011357.6E-39508609IPR033471DIRP domain
PfamPF065841.6E-31508608IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 878 aa     Download sequence    Send to blast
MAPAKGSRTI NKTIIKGYED QQQYDDPPSS SKAKQKKRKI SDLDPKWSKD ELTQFYEAYR  60
RHGKDWKKIS LAVGGKSSDM VRSLYSVHRT FLSLPERQAT AMGFIALVTG HHNASEKFTS  120
HIGDDKMIRA SGKARRRSEA TQQKATGRPD VHEHDCHEGK IAGFSSSFKK RYYGDFVRNS  180
QNHAVRRRTP RIPVIAPAVR NTIDEVSPGI ENIVNTTKRK YEATNKDCAM VPTNECSPDR  240
SSGITETNKA GQDHMFLNTK ATGDTAICQQ QLKKTRIQQP TGEGQTVKVE HETVMASDEG  300
NMLVDSLNQH HIHRNIISED DMLVLDVLNS LVNAPSKTSK LEIKVPSGSH GKTDSVLSGR  360
REKDHPTIDL SKQGRAIGKS SASKTGKKRH KKLLGAEVLA EAQKISVNNL VLPDAPRVGI  420
TDDSSLCTDS ARVGIPEASE DISTKAPRAS TEIKPEIRMS RRTRRKYQMQ CKRKHVSCNE  480
DSDNLQAKKL LHCLSSESLR RWCAYEWFYS AVDYPWFSDN EFVHYLNHAK LSHLSRLTRS  540
EWSAIRSSLG KPRRFSDHFL AVEKEKLEDY REKVRKIYAQ LRDGSRDSLP ADLARPFSVG  600
QEVIVRHPSS RELCDGKVVM MGPDCYKVHF VNPDLGVDIV KDTDCMPVNW LYNRPDNMRR  660
ICLSNNVYSI LETEHIPDLA ASENWDLAVH GVTVTSDKQL KVESVVNGER PPYWSTSDGH  720
PTKSRGCPDN NGGHNNELES YIAAFVQKSL SRARQMVDEA MKANSEGSDV RVRMPNQETD  780
CVGPQSEATV RGAQLPSNLI SNCIATVLSI KRLSDSRHPP ANIAGVLERA SSMLCPSCPE  840
NLAIYKDIET CLSVIANQIL ALVPTALGNC GPPMSPL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.80091e-180callus| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG052000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025816481.10.0protein ALWAYS EARLY 3-like
TrEMBLA0A2T7DSD80.0A0A2T7DSD8_9POAL; Uncharacterized protein
STRINGPavir.J02622.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86963038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.24e-62DNA binding