PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG053800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 257aa    MW: 27097.5 Da    PI: 7.8031
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG053800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.21.6e-171462148
                         TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                         rg+W++eEde l  +v+++G+g +W + +++ g++R++k+c++rw++yl
  Pavir.5KG053800.1.p 14 RGPWSPEEDEALRSYVQRHGSGgNWISMPKKAGLKRCGKSCRLRWLNYL 62
                         89*********************************************97 PP
2Myb_DNA-binding44.24.5e-1469111246
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          g +T eEd  ++ + +qlG++ W++Ia+ +  gRt++++k++w++
  Pavir.5KG053800.1.p  69 GGFTDEEDAVILSLYTQLGSK-WSLIASQLE-GRTDNDVKNYWNT 111
                          569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.19962IPR017930Myb domain
SuperFamilySSF466898.98E-2812109IPR009057Homeodomain-like
SMARTSM007171.9E-121364IPR001005SANT/Myb domain
PfamPF002492.0E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-241569IPR009057Homeodomain-like
CDDcd001676.29E-101662No hitNo description
PROSITE profilePS5129421.65363117IPR017930Myb domain
SMARTSM007175.4E-1167115IPR001005SANT/Myb domain
PfamPF002493.1E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-2370117IPR009057Homeodomain-like
CDDcd001671.88E-971113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MGRTPCCDRA TVKRGPWSPE EDEALRSYVQ RHGSGGNWIS MPKKAGLKRC GKSCRLRWLN  60
YLRPDIRHGG FTDEEDAVIL SLYTQLGSKW SLIASQLEGR TDNDVKNYWN TKLKKRLLAA  120
AATAGIVSTR SPPSVPRLPA APASTPAAAA ATVATHASSL FPLLAIPTVK TEMYTCDDFL  180
APAAFRDDPF AAADGSTSAS AASSASNWSA DNGAVGGGEG SFLLDFCAGS GLGAADDHLQ  240
LPGGYYYPLD PSLSLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-23141177108B-MYB
1h8a_C5e-231211725128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG053800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794161e-161HF679416.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB10 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817369.11e-158transcription factor RAX1-like
RefseqXP_025817370.11e-158transcription factor RAX1-like
TrEMBLA0A2S3HYM11e-156A0A2S3HYM1_9POAL; Uncharacterized protein
STRINGPavir.Ea00256.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.12e-61myb domain protein 36