PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG057300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 240aa    MW: 25212.3 Da    PI: 7.401
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG057300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.86e-30133191159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDg++WrKYG+K vk+s++pr+YYrC+ +gC vkk+ver+++dp++v++tY g Hnh 
  Pavir.5KG057300.1.p 133 LDDGFKWRKYGKKAVKSSPNPRNYYRCSAEGCGVKKRVERDRDDPRYVVTTYDGVHNHA 191
                          59********************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-31120193IPR003657WRKY domain
SuperFamilySSF1182902.35E-27125193IPR003657WRKY domain
PROSITE profilePS5081132.076128193IPR003657WRKY domain
SMARTSM007741.0E-33133192IPR003657WRKY domain
PfamPF031061.2E-23134190IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MAAQLGLVGH EAYAAACSYP PPAAASSYFF PPELVADSGG AGAVMMEFPP PAACTADYCL  60
PEIMGARTHD YYCSPPAPAL AKGCAAAAEN EMMNMSYVDD GGRMTMMGGS AGNGGRQPSP  120
RIGFRTRSEV DVLDDGFKWR KYGKKAVKSS PNPRNYYRCS AEGCGVKKRV ERDRDDPRYV  180
VTTYDGVHNH AVPGRGGAAQ QPARSAAPLV AAPWSAPAAP CDPWGTQLHA AAHSSESSY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-27123193777Probable WRKY transcription factor 4
2lex_A3e-27123193777Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG057300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586131e-165KU058613.1 UNVERIFIED: Panicum miliaceum WRKY28-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818051.11e-118WRKY transcription factor WRKY24-like
TrEMBLA0A3L6SK851e-117A0A3L6SK85_PANMI; Putative WRKY transcription factor 58
STRINGPavir.Ea00274.1.p1e-172(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44137206
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.18e-39WRKY DNA-binding protein 50