PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG057400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 509aa    MW: 52068.3 Da    PI: 8.0372
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG057400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.12e-29254312259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                           Dg++WrKYGqK  kg+++pr+YYrCt a +Cpv+k+v+r+aed++++++tYeg+Hnh+
  Pavir.5KG057400.1.p 254 PDGCQWRKYGQKISKGNPCPRAYYRCTVApHCPVRKHVQRCAEDTSILITTYEGQHNHQ 312
                          69**************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.5E-31238314IPR003657WRKY domain
SuperFamilySSF1182904.32E-26246314IPR003657WRKY domain
PROSITE profilePS5081127.967248314IPR003657WRKY domain
SMARTSM007742.3E-34253313IPR003657WRKY domain
PfamPF031063.7E-25255312IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MEVAVERPTP VKEEKRADAK PEIAAMGSPL PIVFESFPST QRDASIKQEQ RTLEAAKAEM  60
GEVREENERL KTMLSRIVSQ YQLLHTHFLD VVKVHEQAAK AKLPAAPAPA ASLPTGAADD  120
ADDLVSLSLG TRSNGARRKG HERSSSSSGG TAETTADQGQ LSLGLGIAPG SGLSADDDKA  180
SGASAAPVLN LSSDSSSAGD AAKPPAQDDA YACPPAGTSR KSPSAGEGAD DEVQQQAKKA  240
RVSVRVKCNT PTMPDGCQWR KYGQKISKGN PCPRAYYRCT VAPHCPVRKH VQRCAEDTSI  300
LITTYEGQHN HQLPPAATAM ASTTSAAAAM LTSGSTSSSS PASLAHGHHL PLAAAGLLGP  360
TTMVSTAASC PTITLDLTTP APPHSLMHPS PYAAAAAAGY ESKAVPAAWS SGYLAYGAAP  420
PSYYGKSSPA LGHLFGGGLG GSSRPEQLYG AQTYLQRTSS LGAGHGAVAP AVTDTLAKAI  480
TSDPSFQTAL VAAITSIMGR GGGAAAQK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-22240316176WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1237246KKARVSVRVK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG057400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586050.0KU058605.1 UNVERIFIED: Panicum miliaceum WRKY19-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817880.10.0probable WRKY transcription factor 72
TrEMBLA0A3L6SPC50.0A0A3L6SPC5_PANMI; Putative WRKY transcription factor 72
STRINGPavir.Ea00275.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120812938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.16e-44WRKY DNA-binding protein 72