PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG068500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C3H
Protein Properties Length: 256aa    MW: 27563.7 Da    PI: 8.4815
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG068500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.64.9e-097399127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                         ykt+lC  f ++G C y d C+FaHg+
  Pavir.5KG068500.1.p 73 YKTKLCEKFEAGGRCAYEDGCTFAHGQ 99
                         9************************97 PP
2zf-CCCH17.38.3e-06146164725
                          SGGGGTS--TTTTT-SS-S CS
              zf-CCCH   7 rffartGtCkyGdrCkFaH 25 
                            f+  GtC++G+rC++aH
  Pavir.5KG068500.1.p 146 FEFRDRGTCHFGERCSYAH 164
                          568889************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.7E-1667105IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-971103IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.91172100IPR000571Zinc finger, CCCH-type
SMARTSM003560.00117299IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-67399IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.803139167IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.22E-5139165IPR000571Zinc finger, CCCH-type
SMARTSM003560.066139166IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-5140165IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MERDATAAGF GGASRWKASP DGVIVLPAGS AAPQHARHQR DREREREQPR ENCQGAGVFG  60
DQQHPEPPEK VFYKTKLCEK FEAGGRCAYE DGCTFAHGQA ELRPPLHHVP PGHIIKRRTP  120
PPPPPPPPPP PGADTPYGAY HGKVCFEFRD RGTCHFGERC SYAHASAAEV AEMRYPGGPR  180
SVEHALRNAP PLGRAAYAPG ARGISISTSS YAPAARAFQS APAAAAGEDG RRFSRLELLG  240
RKKTSGIYGD WPEED*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG068500.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819424.11e-120zinc finger CCCH domain-containing protein 1-like
TrEMBLA0A3L6SR091e-119A0A3L6SR09_PANMI; Zinc finger CCCH domain-containing protein 1-like
STRINGPavir.Ea00381.1.p1e-152(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133642030
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.18e-08C3H family protein