PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG078200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 258aa    MW: 27775.9 Da    PI: 5.4661
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG078200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.51.6e-1879128255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           y+GVr++  +g+WvAeIr+p   + r +r +lg+f ta eAa a+++a+k+++g
  Pavir.5KG078200.1.p  79 AYRGVRQRT-WGKWVAEIREP---N-RgRRLWLGSFPTAVEAAYAYDEAAKAMYG 128
                          59****999.**********8...3.35*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.7E-1378128IPR001471AP2/ERF domain
SMARTSM003801.0E-3379142IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-2079137IPR016177DNA-binding domain
PROSITE profilePS5103221.44379136IPR001471AP2/ERF domain
PRINTSPR003675.1E-98091IPR001471AP2/ERF domain
CDDcd000184.23E-1980138No hitNo description
Gene3DG3DSA:3.30.730.101.9E-2980137IPR001471AP2/ERF domain
PRINTSPR003675.1E-9102118IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MDLGHGGQGG EGDSSGGQVR KKRTRRKSTG PDSIAETIKW WKEQNQKLQD ESGSRKAPAK  60
GSKKGCMAGK GGPENGNCAY RGVRQRTWGK WVAEIREPNR GRRLWLGSFP TAVEAAYAYD  120
EAAKAMYGAK ARVNFSENSP DANSGCTSAL SLLASSVPAV ALHGFNEKDE VESVETEVHD  180
VKAEVNNDLG SVHVECKSVE VLQSGGSVLQ KEGSVSCDYF NVEEVVEMII IELNADKKIE  240
VHEECLGGDD GFSLFAY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-1680135359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.205640.0callus| leaf| root| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG078200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ1327440.0HQ132744.1 Setaria italica dehydration responsive element-binding protein 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025816059.10.0dehydration-responsive element-binding protein 2A-like
SwissprotA2WL191e-123DRE2A_ORYSI; Dehydration-responsive element-binding protein 2A
TrEMBLA0A3L6QX700.0A0A3L6QX70_PANMI; Dehydration-responsive element-binding protein 2A isoform X1
STRINGPavir.Ea00429.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP73153551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.11e-35ERF family protein