PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG078600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family M-type_MADS
Protein Properties Length: 238aa    MW: 25919.3 Da    PI: 5.8972
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG078600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF26.77.3e-091252145
                         HHHHHHHHHHHT-EEEEEEE-TTSE CS
               SRF-TF 21 lKKAeELSvLCdaevaviifsstgk 45
                         +KK +EL +LC+++++v+++++ g+
  Pavir.5KG078600.1.p  1 MKKTSELATLCGVKACVVVYGEGGE 25
                         8*********************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554552.35E-10167IPR002100Transcription factor, MADS-box
PfamPF003195.9E-7125IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MKKTSELATL CGVKACVVVY GEGGEAQPEV WPSPPEARRV LEKFKAAPEI GRFKKAQSQE  60
DFIRSRISKL RDQVSKLDLA NREHETARLL HESMDGARPG LICTSVEELA NLRWTAEKKM  120
ARVKELLQQQ IASQVALPKH PASSSAHPQP QAPYTEMQML AESEDLQQPL QQDWPTGLQA  180
PADVGIGDVV CNAIASTSNG HASPSSNGGD MTPAHHNLDF CSGFPWAQDV FPLSPME*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG078600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819100.11e-134agamous-like MADS-box protein AGL80
TrEMBLA0A3L6R2G61e-135A0A3L6R2G6_PANMI; Agamous-like MADS-box protein AGL80
STRINGPavir.Ea00433.1.p1e-176(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26650.14e-16AGAMOUS-like 36