PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG079600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 259aa    MW: 28046.1 Da    PI: 10.1341
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG079600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.94.9e-1066110554
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          h+e+ErrRR+riN  + +Lr+++P       + ++Ka+ L ++v+ +k L
  Pavir.5KG079600.1.p  66 HSEAERRRRERINAHLTTLRRMVPDT-----RQMDKATLLARVVDQVKLL 110
                          9************************8.....689***9999999977765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.45E-1352118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.58361110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-1265121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.2E-866110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-1067116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048731.30E-5159225No hitNo description
Gene3DG3DSA:3.30.70.2602.7E-4159206No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MAGCQPLQEG KEPQGLQPYD ACDPSVFIGP VLLPRQARSG PPAPPKMSSS SGSGRSVTEA  60
RALKIHSEAE RRRRERINAH LTTLRRMVPD TRQMDKATLL ARVVDQVKLL KRKAGEASQS  120
MALPPETNEV SIELDTGDNG FVVAGTGTGT DKMIYMKASI SCDDRPDLIA GLTQAFHGLR  180
LRTVRADLTS LGGRAQHVFV LCREEGCWGS AGASLRSLKE AVRQAVARVA SPEMAYGSSP  240
FQSKRQRILE SRYSIMSI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16974ERRRRE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.124470.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG079600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004968277.11e-143transcription factor bHLH30
RefseqXP_004968280.11e-143transcription factor bHLH30
TrEMBLA0A3L6QYE81e-155A0A3L6QYE8_PANMI; Transcription factor bHLH30-like
STRINGPavir.Ea00439.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33473678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.15e-29bHLH family protein