PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG080800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NF-X1
Protein Properties Length: 909aa    MW: 99284.5 Da    PI: 8.3981
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG080800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X118.35.1e-06264281118
             zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                          CG H+C   CH GpCppC
  Pavir.5KG080800.1.p 264 CGLHRCPVNCHDGPCPPC 281
                          ****************** PP
2zf-NF-X119.62e-06371390119
             zf-NF-X1   1 CGkHkCqklCHeGpCpp.Cp 19 
                          CG+H+C + CH+GpC++ C+
  Pavir.5KG080800.1.p 371 CGRHRCPERCHRGPCDEtCR 390
                          *******************8 PP
3zf-NF-X117.49.6e-06424443120
             zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                          CG+H C++ C+ G+CppC++
  Pavir.5KG080800.1.p 424 CGRHACKRRCCAGDCPPCSE 443
                          ******************85 PP
4zf-NF-X120.78.7e-07451470120
             zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                          CG+HkC ++CH+G C pCp+
  Pavir.5KG080800.1.p 451 CGNHKCLSPCHRGACSPCPL 470
                          ******************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS013590109161IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500898.55109162IPR001841Zinc finger, RING-type
SMARTSM004380.008211229IPR000967Zinc finger, NF-X1-type
PfamPF014220.011212228IPR000967Zinc finger, NF-X1-type
CDDcd060081.06E-8254302No hitNo description
SMARTSM004380.0013264283IPR000967Zinc finger, NF-X1-type
PfamPF014221.2E-4264281IPR000967Zinc finger, NF-X1-type
CDDcd060083.00E-7307347No hitNo description
SMARTSM004380.0092317336IPR000967Zinc finger, NF-X1-type
PfamPF014220.2317335IPR000967Zinc finger, NF-X1-type
CDDcd060086.87E-9361410No hitNo description
SMARTSM004380.0029371391IPR000967Zinc finger, NF-X1-type
PfamPF014228.3E-4371390IPR000967Zinc finger, NF-X1-type
CDDcd060086.81E-9414462No hitNo description
SMARTSM004380.0069424443IPR000967Zinc finger, NF-X1-type
PfamPF014220.0015424442IPR000967Zinc finger, NF-X1-type
CDDcd060083.60E-10441489No hitNo description
SMARTSM004380.0083451470IPR000967Zinc finger, NF-X1-type
PfamPF014226.1E-5451469IPR000967Zinc finger, NF-X1-type
SMARTSM0043825514529IPR000967Zinc finger, NF-X1-type
PfamPF0142236518528IPR000967Zinc finger, NF-X1-type
SMARTSM00438140537582IPR000967Zinc finger, NF-X1-type
PfamPF0142216537546IPR000967Zinc finger, NF-X1-type
SMARTSM0043897619658IPR000967Zinc finger, NF-X1-type
PfamPF014220.53619629IPR000967Zinc finger, NF-X1-type
SMARTSM004380.025671689IPR000967Zinc finger, NF-X1-type
PfamPF014220.32671688IPR000967Zinc finger, NF-X1-type
SMARTSM004382.3734755IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 909 aa     Download sequence    Send to blast
MPSSYAAAAA GSSSRKTNRT STAAAATARP PAPSPSPAPA PPAANPSAAS DSDPSSYSSS  60
SGDEADLTAS DSATASVVSA YLSVAGEGAD LSKVGIFLSS AARRRSPPCL ICFDPIRPSD  120
PVWSCSSSCF AILHLPCIQS WAHQSASGAA VPCPTWGCPK CRFAYPKSQT PTSYLCFCSK  180
TVDPTPDPWI LPHSCGDVCG RRLNANLDSG CEHTCLLLCH PGPCPPCPAV VPNAPCFCGA  240
HREPRRCAHQ RYSCAGKCNK RLSCGLHRCP VNCHDGPCPP CAVRGKHKCE CGETMEEKLC  300
SESVFQCKRE CGGMLDCGKH RCERGCHGGK CGECPLRGRR TCPCGKKDYP KLECDAEAAT  360
CGSTCEKVLG CGRHRCPERC HRGPCDETCR LVITKSCRCG GLKKEVPCYQ ELTCERKCQR  420
LRNCGRHACK RRCCAGDCPP CSETCDRKLR CGNHKCLSPC HRGACSPCPL MKTISCACGK  480
TCFEVPCGTE KNQKPPKCSK KCNIPRLCRH KLECRPHKCH YGACPPCKLT CGEELSCGHT  540
CKERCHGPIS PPNPEFTLKP TKKKMEKQIE CTPGTLCPPC KEVVLGPCFG QHLGQERAMP  600
CSKWRPFPCQ NLCGNPLLCG NHYCTKSCHV LEVPLNQPEG DPIASVSKEN ALAEPCEQCD  660
LPCQRVREPP CSHRCPLPCH LSDCPPCKVL VKKPCYCGAM VHAFECVYFN NLKAKEQLKV  720
RSCGGPCHRK LPNCPHLCSE VCHPGMCPSV DQCMKKVNVR CACNMLKQEW ICQDVLKEYR  780
NSGRDPKEVP KSQFGAGLIA CGEDCKKKVK VPDPELHLRK SQETKNPAVE VASVPKRRKR  840
RDRGQEVKVS KFQEVKAYVM RVLLIILLSI IIAAGLYLLW KGIFWLSDWM NEMEEQRARQ  900
RHPRGATL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1834840PKRRKRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.108370.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Constitutively expressed in mesophyll and guard cells. {ECO:0000269|PubMed:22073231}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG080800.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0666630.0BT066663.1 Zea mays full-length cDNA clone ZM_BFb0042A15 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004968270.10.0NF-X1-type zinc finger protein NFXL2
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLK3XEA60.0K3XEA6_SETIT; Uncharacterized protein
STRINGPavir.J07154.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP107733537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors