PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.5KG091900.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 240aa MW: 27559.6 Da PI: 8.5834

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.5KG091900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	69.1	1.1e-21	12	100	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 f+ +Y+ + GF+vrk++++k+k +g++t+ ++vC ++g+r+e+k + + + +ra+trt+C+ ++ v +++ gk++v++l+leHnH l+ Pavir.5KG091900.1.p 12 FWIRYGGQKGFEVRKRYTNKRKSDGKVTSCRYVCANKGHRKEDKMD-HLIKCPRAKTRTHCQVRMGVVLDQeMGKYKVADLVLEHNHILQ 100 999**************************************999.999**************99999************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.4E-16	12	99	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MEFNTVDEAW TFWIRYGGQK GFEVRKRYTN KRKSDGKVTS CRYVCANKGH RKEDKMDHLI 60 KCPRAKTRTH CQVRMGVVLD QEMGKYKVAD LVLEHNHILQ LLETSQLMVS QRKISELQGF 120 KIETADDAGI GPKAAHELAI IQVGGSLNLS YTLRSMLMYF QDKIAENPSF QYALHMDRDE 180 QIANIFWVDA KMITDYAYFG DVVSFDTTFG TNKESRPFGV FVGFNQFRET VVFVLQVVI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.5KG091900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB108421	1e-164	AB108421.1 Oryza sativa Japonica Group transposon AnacB14 DNA, complete sequence.
GenBank	AC077693	1e-164	AC077693.19 Oryza sativa chromosome 10 BAC OSJNBa0095C07 genomic sequence, complete sequence.
GenBank	AP014966	1e-164	AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025876512.1	1e-149	protein FAR1-RELATED SEQUENCE 5-like isoform X1
Refseq	XP_025876513.1	1e-149	protein FAR1-RELATED SEQUENCE 5-like isoform X2
Refseq	XP_025877975.1	1e-148	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	B8ALN6	1e-148	B8ALN6_ORYSI; Uncharacterized protein
TrEMBL	B8BHR2	1e-146	B8BHR2_ORYSI; Uncharacterized protein
STRING	OS10T0571900-00	1e-146	(Oryza sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	6e-36	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pavir.5KG091900.1.p