PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG097100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 243aa    MW: 25534.7 Da    PI: 9.4471
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG097100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP242.91.2e-1374122155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s+ykGV   + +grW A+I++      r +r++lg+f  +e Aa+a++ a+++++g
  Pavir.5KG097100.1.p  74 SRYKGVVPQP-NGRWGAQIYE------RhARVWLGTFPDEEAAARAYDVAALRYRG 122
                          78****9888.8*********......44*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.0E-974122IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-1774130IPR016177DNA-binding domain
CDDcd000184.47E-1574130No hitNo description
Gene3DG3DSA:3.30.730.103.2E-2175130IPR001471AP2/ERF domain
SMARTSM003804.6E-2375136IPR001471AP2/ERF domain
PROSITE profilePS5103221.85275130IPR001471AP2/ERF domain
PRINTSPR003677.0E-57687IPR001471AP2/ERF domain
PRINTSPR003677.0E-596112IPR001471AP2/ERF domain
SuperFamilySSF1019361.96E-6140175IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.6E-7140179IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MGMVVESISP TAAEASSASS RSTGASTATT ESGAAQQPPL AAAPASGEVS PSPADEQAVT  60
SQPSAAAAVP QGSSRYKGVV PQPNGRWGAQ IYERHARVWL GTFPDEEAAA RAYDVAALRY  120
RGREAATNFP GAGASAPELG WSRFVREKGL RAGDTIVFSH STYGPEKQLF IDCKKTNKTA  180
EKPKEAAARV VRLFGVDIAG DGCQKRARPP VEMAFEKGHQ ELFLKKQCVA HHRSPALGAF  240
LL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG097100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1006865e-66FP100686.1 Phyllostachys edulis cDNA clone: bphyem201a06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015693577.18e-51PREDICTED: AP2/ERF and B3 domain-containing protein Os01g0141000-like
SwissprotQ9AWS01e-35Y1410_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0141000
TrEMBLA0A2S3HXM72e-46A0A2S3HXM7_9POAL; Uncharacterized protein
STRINGPavir.J23476.1.p1e-68(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1870756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25730.13e-18ethylene response DNA binding factor 3
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]