PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG111100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family TALE
Protein Properties Length: 650aa    MW: 72242.4 Da    PI: 5.7952
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG111100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.45.8e-094084451954
                          HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          Fe   ++yp+ +e+  LA+++gLt +q+++WF N R +
  Pavir.5KG111100.1.p 408 FEHflHPYPKDSEKLMLARQTGLTRSQISNWFINARVR 445
                          665559******************************88 PP
2BELL120.76.2e-39271342172
                 BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                          erqelq+k akL+ +l+eVd++Yk+y++q+q v+ssF++vag g+akpYt++Al++iSrhFrcLkdai +qi
  Pavir.5KG111100.1.p 271 ERQELQNKMAKLMAMLDEVDRKYKHYYHQMQSVVSSFDVVAGPGAAKPYTAVALQTISRHFRCLKDAINDQI 342
                          79********************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005744.7E-57195340IPR006563POX domain
PfamPF075264.3E-51201338IPR006563POX domain
PROSITE profilePS5007112.325386449IPR001356Homeobox domain
CDDcd000864.13E-12389450No hitNo description
SMARTSM003893.6E-9389453IPR001356Homeobox domain
SuperFamilySSF466892.82E-17390455IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.8E-28392455IPR009057Homeodomain-like
PfamPF059201.0E-17406445IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 650 aa     Download sequence    Send to blast
MMATYYSSPG SERDSQNMYS RDLGNASYPM PSALGNLLYL NNSISGPYTE FSGILQSQQN  60
CMEMPDPGHP SVMSQDSSAR ESDMLGSHQG QRSFGPVKDM KNEMLMHMMD GSQSSTADLI  120
HDDDHNGAQL DFGVLNNHSS SNIPSVQGQG LSLSLNTQIL APSLPYWSVK PDMLSPHSYH  180
DSLRVDDIRM KSMQSEASRA IWNSRYLKAA QELLDEVVNV WKNIKQKAQK EQVEAGKTDA  240
KETEGGLKSE GVSSNPQESA ANAAPELSTA ERQELQNKMA KLMAMLDEVD RKYKHYYHQM  300
QSVVSSFDVV AGPGAAKPYT AVALQTISRH FRCLKDAIND QINVIRKKLG EEENSSGKEG  360
KLTRLRYIDQ QLRQQRAFQQ YGMIPQNAWR PQRGLPENSV TILRAWLFEH FLHPYPKDSE  420
KLMLARQTGL TRSQISNWFI NARVRLWKPM IEDMYKEEIG DIEQDSNSSS DNAPRSKGKM  480
ASSEDKEDLK SSTPRVCESS QLSESRASIG TMNVGGAAVG FQNEANPDDS FMNLMLKDQR  540
SNEGDGGLLV HNAVAHHQDE NARFMAYHLA ELGRYGNGNV SLTLGLQHSG SSLSVHNAQQ  600
SFAGVGDDDI YNATAPLGVS VTSSDYESMN QMDQRQRFEQ SPLLHDFVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A3e-16395452158Homeobox protein Meis1
4xrs_B3e-16395452158Homeobox protein Meis1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.102530.0callus| leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG111100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004963319.10.0BEL1-like homeodomain protein 7
RefseqXP_004963320.10.0BEL1-like homeodomain protein 7
RefseqXP_004963321.10.0BEL1-like homeodomain protein 7
TrEMBLA0A3L6SYV00.0A0A3L6SYV0_PANMI; BEL1-like homeodomain protein 7
STRINGSi021437m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90138131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34610.21e-113BEL1-like homeodomain 6