PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG131900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HB-other
Protein Properties Length: 214aa    MW: 23334 Da    PI: 11.0071
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG131900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.61e-08170202941
                          HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-H CS
             Homeobox   9 keqleeLeelFeknrypsaeereeLAkklgLte 41 
                          ++qle+Le+ + +++yp++++r+eL+ +lgLt 
  Pavir.5KG131900.1.p 170 PYQLEVLERTYTEDSYPNETKRAELSVQLGLTY 202
                          58*****************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.13E-6170203IPR009057Homeodomain-like
PfamPF000462.4E-6170202IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.3E-7170203IPR009057Homeodomain-like
CDDcd000862.65E-5170201No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MGATKAPGRR RRRGWGAPAC RRPPRTLAVG AVEPVRLDPG GRSALRRQDP LRAARAHGRY  60
PDAADDGGGD ERGRVAAQRQ DDGAHRPPSA PPPGAPPDAR APERRGRVPE GQGRHRSDGH  120
LPAHRREGLQ LGPDGEEQVG ARAQAAGVGP FLEEERERAR KIAREIKGFP YQLEVLERTY  180
TEDSYPNETK RAELSVQLGL TYHRHGALWP LPP*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.152688e-71root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG131900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0377015e-87BT037701.1 Zea mays full-length cDNA clone ZM_BFb0188M04 mRNA, complete cds.
GenBankBT0839345e-87BT083934.2 Zea mays full-length cDNA clone ZM_BFb0056B03 mRNA, complete cds.
GenBankBT0872335e-87BT087233.1 Zea mays full-length cDNA clone ZM_BFb0009G24 mRNA, complete cds.
GenBankBT0879155e-87BT087915.1 Zea mays full-length cDNA clone ZM_BFb0307H15 mRNA, complete cds.
GenBankDQ2453275e-87DQ245327.1 Zea mays clone 14512 mRNA sequence.
GenBankEU9629505e-87EU962950.1 Zea mays clone 246814 hypothetical protein mRNA, complete cds.