PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.5KG146500.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bHLH

Protein Properties

Length: 210aa MW: 21975 Da PI: 8.9687

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.5KG146500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	23.9	7.3e-08	35	98	6	55
HHHHHHHHHHHHHHHHHHHCTSCC.C...............TTS-.STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.as............kapskK.lsKaeiLekAveYIksLq 55 + +E++RR +++ +L +l+P+ a+ ++p+k + + L A YIk+L+ Pavir.5KG146500.1.p 35 KDVEKNRRLHMKGLCLKLSSLIPPaACrasllseaaasaSNPNKDaATQLDQLDTAAAYIKQLK 98 689*******************666********8888888**************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.0E-10	33	109	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.31E-8	34	109	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.5E-4	35	97	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence Send to blast
MKSRRQSSGG SSAGATAAGE GNTHSSGGGC KLERKDVEKN RRLHMKGLCL KLSSLIPPAA 60 CRASLLSEAA ASASNPNKDA ATQLDQLDTA AAYIKQLKER IDALKRRKED GGGRAATAGS 120 GAVRMPVVEV RCQDGATLDV VLISEAGRPF KLHEVITALE EEGAEVVSAS FSVVGDKIFY 180 TIHSQALSPR IGLDAARVSE RLHDLLLLA*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.322	0.0	callus\| stem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.5KG146500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT038818	5e-81	BT038818.1 Zea mays full-length cDNA clone ZM_BFb0332C18 mRNA, complete cds.
GenBank	KJ726868	5e-81	KJ726868.1 Zea mays clone pUT3409 bHLH transcription factor (bHLH76) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025819704.1	1e-117	transcription factor bHLH168-like
TrEMBL	A0A2S3HXR1	1e-116	A0A2S3HXR1_9POAL; Uncharacterized protein
TrEMBL	A0A2T7DQ29	1e-116	A0A2T7DQ29_9POAL; Uncharacterized protein
STRING	Pavir.Eb00837.1.p	1e-117	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP829	36	133

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10585.1	2e-18	bHLH family protein

Link Out ? help Back to Top
Phytozome	Pavir.5KG146500.1.p