PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.5KG146900.2.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bHLH

Protein Properties

Length: 226aa MW: 23912.8 Da PI: 6.9537

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.5KG146900.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.3	1.7e-10	37	84	6	54
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-.STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskK.lsKaeiLekAveYIksL 54 +e+Er+RR++++s ++L +l+Pk + +s+ ++ L +A YIk+L Pavir.5KG146900.2.p 37 KEIERKRRQQMKSLCATLASLIPKeD---YSRDaMTQLGSLDEAAAYIKKL 84 79********************77...88888*************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.956	31	84	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.8E-12	36	98	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.75E-11	36	100	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.89E-5	36	88	No hit	No description
SMART	SM00353	3.7E-7	37	90	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.9E-8	37	84	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0050832	Biological Process	defense response to fungus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MEMGAGKKSR SSSDTATAGK RSSMRSNSSG TTAVERKEIE RKRRQQMKSL CATLASLIPK 60 EDYSRDAMTQ LGSLDEAAAY IKKLKERVDE LQQKRSSAQL MAADTSGGGG GGGGSVASTS 120 AAATAASGGA RSEEDAAEEA AEAPVVEVVH YNDGSSLDVV LISSVERPFK LHEVVTVLEE 180 EGAEIINANL SVVGRKIFHT IHCRAFSPRI GIEVSRVSER LRELV*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	39	44	ERKRRQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.5KG146900.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025818432.1	1e-108	transcription factor bHLH162-like
TrEMBL	A0A2S3HX22	1e-107	A0A2S3HX22_9POAL; Uncharacterized protein
STRING	Pavir.J08114.1.p	1e-142	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10586.1	6e-12	bHLH family protein

Link Out ? help Back to Top
Phytozome	Pavir.5KG146900.2.p