PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG147000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 221aa    MW: 23744.7 Da    PI: 9.7544
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG147000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.81.1e-093886654
                         HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-..STCHHHHHHHHHHHHHH CS
                  HLH  6 nerErrRRdriNsafeeLrellPk.askapskK..lsKaeiLekAveYIksL 54
                         +e+Er+RR++++s   +L +l+Pk     +s K  ++  + L +A  YIk+L
  Pavir.5KG147000.1.p 38 KEIERKRRQHMKSLCVKLASLIPKeH---YSSKdtMTQQDSLDEAATYIKKL 86
                         79**********************55...44444599*************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.96E-102798IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.4673286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.5E-123799IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.02E-63790No hitNo description
SMARTSM003533.2E-63892IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.8E-73886IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0050832Biological Processdefense response to fungus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MDVKKSSSSS HTAAEGRRSS ASDSSGRGGA SAAGVERKEI ERKRRQHMKS LCVKLASLIP  60
KEHYSSKDTM TQQDSLDEAA TYIKKLKERV DELHQKRSSA QLLAGMRGGG GGASTSATTT  120
RSSGVGSEEA DEEAMAAPPV VEVRHHHDGS SLDVVLVSSV ARPFKLHEVV TVLEEEGAEI  180
INANFSVVGR KIFYTIHSRA FSSRIGIEVS RLSERLRALV *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14045ERKRRQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG147000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7277512e-49KJ727751.1 Zea mays clone pUT5692 bHLH transcription factor (bHLH83) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818150.11e-109transcription factor bHLH162-like isoform X2
TrEMBLA0A2S3HX411e-109A0A2S3HX41_9POAL; Uncharacterized protein
TrEMBLA0A2S3HX771e-109A0A2S3HX77_9POAL; Uncharacterized protein
STRINGPavir.Ea00786.1.p1e-153(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82936133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10586.13e-12bHLH family protein