PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG147000.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 192aa    MW: 20369.7 Da    PI: 7.8407
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG147000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.18.5e-103886654
                         HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-..STCHHHHHHHHHHHHHH CS
                  HLH  6 nerErrRRdriNsafeeLrellPk.askapskK..lsKaeiLekAveYIksL 54
                         +e+Er+RR++++s   +L +l+Pk     +s K  ++  + L +A  YIk+L
  Pavir.5KG147000.2.p 38 KEIERKRRQHMKSLCVKLASLIPKeH---YSSKdtMTQQDSLDEAATYIKKL 86
                         79**********************55...44444599*************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-102698IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.4673286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.26E-73790No hitNo description
Gene3DG3DSA:4.10.280.104.1E-123799IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.5E-73886IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-63892IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0050832Biological Processdefense response to fungus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MDVKKSSSSS HTAAEGRRSS ASDSSGRGGA SAAGVERKEI ERKRRQHMKS LCVKLASLIP  60
KEHYSSKDTM TQQDSLDEAA TYIKKLKERV DELHQKRSSA QLLAGMRGGG GGASTSATTT  120
RSSGVGSEEA DEEAMAAPPV VEVRHHHDGS SLDVVLVSSV ARPFKLHEVV TVLEEEGAEI  180
INANFSVVGR I*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14045ERKRRQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG147000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7277514e-41KJ727751.1 Zea mays clone pUT5692 bHLH transcription factor (bHLH83) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818152.18e-89transcription factor bHLH162-like isoform X4
TrEMBLA0A2S3HX086e-88A0A2S3HX08_9POAL; Uncharacterized protein
TrEMBLA0A2S3HX775e-88A0A2S3HX77_9POAL; Uncharacterized protein
TrEMBLA0A2T8INA16e-88A0A2T8INA1_9POAL; Uncharacterized protein
STRINGPavir.Ea00786.1.p1e-133(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.12e-11bHLH family protein