PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG170000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 532aa    MW: 58381.3 Da    PI: 5.7275
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG170000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM156.31.3e-4891361128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          lppGf F P+d el+ +yLk+k+ g+k+e  + i+ vdiyk+ePwdLp+  ++  e+++w+fF++rd+ky+tg+r+nrat +gyWk+tgk
  Pavir.5KG170000.1.p   9 LPPGFGFYPSDTELIGHYLKRKILGQKIEH-DLIPVVDIYKHEPWDLPAkcNFPIEDNKWHFFASRDRKYPTGSRSNRATVAGYWKSTGK 97 
                          79**************************99.99***************6245555999******************************** PP

                  NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          d++++  ++++ g+kktLvf++gr p+g++t+W+mhey +
  Pavir.5KG170000.1.p  98 DRAIKL-NKRTLGTKKTLVFHEGRPPSGRRTEWIMHEYYI 136
                          ******.999****************************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.11E-563159IPR003441NAC domain
PROSITE profilePS5100554.3999159IPR003441NAC domain
PfamPF023651.1E-2310135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MEALRNMKLP PGFGFYPSDT ELIGHYLKRK ILGQKIEHDL IPVVDIYKHE PWDLPAKCNF  60
PIEDNKWHFF ASRDRKYPTG SRSNRATVAG YWKSTGKDRA IKLNKRTLGT KKTLVFHEGR  120
PPSGRRTEWI MHEYYIDEKE CQVSPDMKDA FVLCRVTKRN DWALENDNEA GDRNPHHQQQ  180
IDASISVVKP EHAATSVVNP EDAATSVVNP EDAAASVVKP EDAAASVICA GESNDVAMAS  240
ITADKGSPNG SNELEEWLEE LLDPSPSFNP LPDTGCAILP LSEQYAESSN TGSVVPKIGP  300
DHASPIKDGT DATDYLFIDD LPDDLYNMLY PGIDDFSNNM FLEPAGLSGA SATNQAYHLM  360
EESPFTLPNN FEGGTLKDEL QLDQENNNPN LSNGSIDTGV TIRRRIASAS AANISPAPGR  420
IKMQLGIKKM VTSNSESINQ TMKFADNSGR RLDLMTSVEH QKKHANDANS VKRSDAAKPG  480
EGYSNQGYHR GVKNAFRCSS VGFNAYILFA IFVVGVAAAV ALHYHRLGAS L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-4521628172Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.64150.0callus| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:10660065}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG170000.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt and cold stresses. {ECO:0000269|PubMed:18813954}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9554470.0EU955447.1 Zea mays clone 1532551 TIP mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818496.10.0NAC domain-containing protein 74-like
SwissprotQ7GCL71e-170NAC74_ORYSJ; NAC domain-containing protein 74
TrEMBLA0A3L6QW200.0A0A3L6QW20_PANMI; NAC domain-containing protein 74-like
STRINGPavir.Ea01166.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75603847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17730.19e-63NAC domain containing protein 57
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]