PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG201800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family G2-like
Protein Properties Length: 220aa    MW: 23040.8 Da    PI: 9.7802
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG201800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like73.92.2e-23103158155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsek.AtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          k+r++W++eLH+ F++a + LG   + A+Pk+il lm+v+g+t+e+v+SHLQkYRl
  Pavir.5KG201800.1.p 103 KARVVWSEELHDMFLKAYNILGEVSRdAVPKKILALMNVDGITRENVASHLQKYRL 158
                          68*******************986544****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.32100161IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.6E-24101162IPR009057Homeodomain-like
SuperFamilySSF466899.86E-18102162IPR009057Homeodomain-like
TIGRFAMsTIGR015571.9E-22103158IPR006447Myb domain, plants
PfamPF002493.3E-6105157IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MTPHAPARPP EATGGDGSGG SAVEAAAQSK PRKRKKPRPP PQPPSSSMEE AAQSKPAKRK  60
KKVASSSAPA GPATPSPPSG GDGTGSGDGQ QLAAGDGQQQ RGKARVVWSE ELHDMFLKAY  120
NILGEVSRDA VPKKILALMN VDGITRENVA SHLQKYRLSL KQEEKRIPEP DNEGELEASS  180
SQTPLPTTPP QAQAQEPAPS SLHTTILPPP LLENGTLVPV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-17103162562ARR10-B
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12937KPRKRKKPR
23036PRKRKKP
33135RKRKK
43137RKRKKPR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG201800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819305.14e-75probable transcription factor GLK2
TrEMBLA0A2T7DN525e-78A0A2T7DN52_9POAL; Uncharacterized protein
STRINGPavir.Eb01200.1.p2e-63(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2096956
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58080.14e-18response regulator 18